FMO04079.5prime Sequence
506 bp (506 high quality bases) assembled on 2008-08-11
> FMO04079.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCCAAAAACACG
TCCAGCAACGCGTTCCGCAAGATCGATGTGGACCAGTACAATGAGGACAA
CTTCCGGGAGGATGATGGGGTGGAGAGCGCGGCAGCCGGTCCGGATGAGA
GCGAGATTACGACGCTGCTGACGCAGGGAAAATCCGTGGAGGCGCTCCTG
AGTGCGCTGCAGAATGCCCCGCTGCGCTGCAAGAACCAGAATGTGAAGGA
CCACGCCCTGAACATCACGCTGCGGGTGCTGCTGTCCATCAAGTCGACGC
AAATGGACCAGGCCATCGACACCTTGGACCAGAACGACCTAATAGACGTG
CTGATGAAGTACATATATCGGGGATTCGAGATCCCCTCGGAGGGCTCCAG
TGGCCACCTGCTGCAGTGGCATGAGAAGGCCTTCGCCAAGGGAGGAGTGG
GCTGCATTGTCCGCGTGCTGTCCGACACAAATCGCGCCGCAAGCTTTCTA
GACCAT
FMO04079.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc5-RB | 1070 | CG9881-RB | 76..530 | 34..488 | 2275 | 100 | Plus |
| Arpc5-RA | 785 | CG9881-RA | 76..530 | 34..488 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2580642..2580883 | 247..488 | 1210 | 100 | Plus |
| 2L | 23513712 | 2L | 2580367..2580582 | 34..249 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:19 has no hits.
FMO04079.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:42 Download gff for
FMO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc5-RA | 76..530 | 34..488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:15:42 Download gff for
FMO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p16-ARC-RA | 77..531 | 34..488 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:25 Download gff for
FMO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc5-RA | 76..530 | 34..488 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:25 Download gff for
FMO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2580367..2580581 | 34..248 | 100 | -> | Plus |
| 2L | 2580644..2580883 | 249..488 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:42 Download gff for
FMO04079.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2580367..2580581 | 34..248 | 100 | -> | Plus |
| arm_2L | 2580644..2580883 | 249..488 | 100 | | Plus |
