FMO04080.5prime Sequence
943 bp (778 high quality bases) assembled on 2008-08-11
> FMO04080.5prime
GCATACATTATACGAAGTTATCAGTCGACATGATCGAGGTGCTGTGCCTG
CTGCTGGGCAGGATCCTGCTGCTCCTGGTCGGCGGCTACGAACTGATGTG
GCGGCTCCGAGAGCGACTGAATGCACTGGCCGTCCGGTCATATGACCTTT
GGCGCAGCAAAGCGGCACGTGAGGCGCACGAGCGGCGCGTGCTCGCTGAC
TGCCGCTCCCAGTTGACGAAGACGCCGCAGCATCTGGTCCTGGTTATCTC
CCCCGTAAATGCCGGCGTGGATGCGGTGCTCCTCAGCAGGATCTTCGACT
TTGCCCTGGACGTGGGCATCAAACACGTCAGCCTGTACGACAGGCGGACG
AAAGGCAGGGGATACGTGGACATGGCCGATCTCTGTCGATCCACCAACGC
GGACACGGGCAGCTGCTTAAAGTGGCCACCCGTAGCCAGTCCCAGCAAAC
TGGAGAACCAGCCCAAAAACGGACAAAAGACAAATGGTTATGTGAACGGT
TCACATTCCCCTCAACTGCAGCTCCATCAAATCAGCGCCTCCGACGGCCA
TGCCCTGATCGCCGACGTCTGCCGCGAGTTGTACGAAGACAGTAAGACGG
AGTTGGTGCAGAGCCCTACTTAAAGCAGAAGCGCGAAGCGCTGACAGGAG
CAGATCAGCGACATGCTGAGCAAGCGACTCGGGTTCGAGGCCCCCGGAGC
CGGAGCTGGGGCATCGTGTTCGCCCGGCAGACGTGCACCTACGGGCCTGC
TTCCCTGGCACGCGCGCTTCACCGAGTTCCACACGCATCCCAACGGACGC
CACATTCGACGTGAAGACGTTCGCCGCATCCTGTTGAAAGTACTCGCGGT
GCGAGCAGCGGTGGGGCACGGCAAGCTATTCTAGACCATTCGTTTGGGGC
GCCGGGCCCAGTTAAGGGGTCCATAATCCTAATCATAATTCAT
FMO04080.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango14-RB | 1198 | CG4775-RB | 240..1075 | 28..870 | 3935 | 98.5 | Plus |
| Tango14-RA | 1272 | CG4775-RA | 314..1149 | 28..870 | 3935 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1158974..1159467 | 28..521 | 2455 | 99.8 | Plus |
| 2L | 23513712 | 2L | 1159753..1160097 | 519..870 | 1270 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:33:17 has no hits.
FMO04080.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:54 Download gff for
FMO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango14-RA | 314..1154 | 28..876 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:20 Download gff for
FMO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango14-RA | 296..1136 | 28..876 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:05 Download gff for
FMO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango14-RA | 314..1154 | 28..876 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:05 Download gff for
FMO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1158974..1159467 | 28..521 | 99 | -> | Plus |
| 2L | 1159756..1160113 | 522..892 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:54 Download gff for
FMO04080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1158974..1159467 | 28..521 | 99 | -> | Plus |
| arm_2L | 1159756..1160113 | 522..892 | 93 | -> | Plus |
