FMO04081.5prime Sequence
591 bp (591 high quality bases) assembled on 2008-08-11
> FMO04081.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGTGACGTTGC
AACAGTGCAGAAGATAGCAAACTGCCTGGGCGTTAATCCCGGCAAGGTGC
AGCTGAACGAGGAGCAGGTCGTAACGCGCACGAGTGGGCAAAAGAAGAGC
GTGGCCGGATTCGCCTCGATCCTGGAGAGCCTGGCCAGCGAGTCCAAGTC
GGAGACCGCCCAGAACAGCAGGGCGTCGCGGGAGGTGGAAGCCCAGGTGT
ACCAGTGGATCGAGTTCTCCGTGCTCTACGTGGCGCCCGGCTCCAAGGAC
AAGTACGTGTCCAAGCAGCTTCTGGCGGACTTCAACAAACTGTTTGCCAG
CAAATCCTACCTGGTGGGCCACTTCATCACTCTAGCCGACCTGGCCGTCT
ACTATGCCATCTACGATCTTGTGAAATCCCTTTCGCCGGTGGACAAGGAG
GTATATTTGAATCTCTCCCGCTGGTTCGATCACCTCCAGAATCGCGCGGA
TGTGCACCAGGGCGAGCCACTGCTGAACTTCACCACCATCTACCTGCACG
GCTGGGCCACAGGCACCCACATCGCAAGCTTTCTAGACCAT
FMO04081.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30185-RA | 739 | CG30185-RA | 75..612 | 36..573 | 2690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23544246..23544553 | 116..423 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 23544624..23544774 | 423..573 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 23544098..23544181 | 36..119 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:59 has no hits.
FMO04081.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:34 Download gff for
FMO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30185-RA | 67..617 | 28..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:10 Download gff for
FMO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30185-RA | 50..600 | 28..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:46:13 Download gff for
FMO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30185-RA | 67..617 | 28..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:46:13 Download gff for
FMO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23544248..23544553 | 118..423 | 100 | -> | Plus |
| 2R | 23544625..23544779 | 424..579 | 98 | | Plus |
| 2R | 23544089..23544179 | 31..117 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:34 Download gff for
FMO04081.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19431612..19431702 | 31..117 | 94 | -> | Plus |
| arm_2R | 19431771..19432076 | 118..423 | 100 | -> | Plus |
| arm_2R | 19432148..19432302 | 424..579 | 98 | | Plus |
