FMO04083.5prime Sequence
1228 bp (1011 high quality bases) assembled on 2008-08-11
> FMO04083.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGCCCTTCGCTTGACCC
AGAGATTGCTGCAGACGCAGACGCCGTTCCTCACTCGCGGCTATCCCTTG
CTGGTGACCAAGGAGAAGACCGAGGATGTGGCCCACACCAAATCGGCGCT
GCAGAAGAAAGTCACGGGCACCGATATTCCCTCGGCACAGTACGGAGGTC
GTCATGCCGTCACCATGCTGCCGGGCGGCGGCATTGGTCCTGAACTGATG
GGCTATGTGCGCGAGATCTTCCGGTATTGCGGTGCACCCATCGATTTCGA
GGTGATCGACATCGATCCCTCCACCGAGGGCAACGATGATCTGGACTATG
CCATCACATCGATTAAGAGGAACGGAGTGGCACTCAAGGGCAACATCGAG
ACCAAGTCCCAATCCTTGACCGAAGTCTCCCGCAACGTGGCCATCCGTAA
CGAGCTGGATCTGTACGTCAATGTGGTGCACTGCAAGTCGTATCCGGGCA
TTCCGGCCCGCCATCACGACATTGACGTGGTGCTCATCCGCCAAAACACC
GATGGCGAGTACGCCATGTTGGAACATGAGTCTGTGCCCGGAATTGTGGA
GAGCATGAAAGTGGTGACCGTCGAGAATGCCGAGCGTGTGGCCCGCTACG
CCTTTGAGTTCGCCCGCCAAAACAATCGCAAGAAGGTTACCACCATTCAC
AAGGCCAACATCATGAAGCTGTCCGATGGTCTCTTCCTGGAGGTTGCCAA
CCGTGTGCACAAGGACTATCCCGAACTGGAGCACAACAACATGATTATCG
ACAACACCTGCATGCAGTCCGTGTCGAATCCTCACCAGTTCGACGTGATG
AACATGACCAATCTGTACGGCACCATCGTGTCCAATGTTCTTTGCGGTTT
GATGGGCGGAGCTGGGCTTCATATCCGGCAGGAACTACGTGACCATTACG
CCATCTTTGAGCCTGGCACCCGTAACACAGGAACCGGCCATTGCCGGCAA
GATATCGCCAACCCTTGTGCCATGATCAGTGCCAGTATTCGATTATGTTT
GAACCATTCTGGTCACAGAGCACGCAATGTCATTCAGAGCCGTCTACCAG
ACCATGTCAACGATGCCATCCCACGCCGGAATTGCCGCACCAACTCAGTT
ACCGAAGTTGGTTGGAAATTCTCAGATCTTGGAAGTGCCAGGGCCGGTGA
ATTTGCCAATGGATACTAATTTATGGGC
FMO04083.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5028-RB | 1934 | CG5028-RB | 122..1320 | 31..1223 | 5115 | 96.4 | Plus |
| CG5028-RA | 1407 | CG5028-RA | 122..1320 | 31..1223 | 5115 | 96.4 | Plus |
| CG5028-RD | 1742 | CG5028-RD | 122..1287 | 31..1190 | 5085 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25681265..25682037 | 166..939 | 3805 | 99.7 | Plus |
| 3R | 32079331 | 3R | 25681121..25681199 | 89..167 | 395 | 100 | Plus |
| 3R | 32079331 | 3R | 25682105..25682196 | 947..1038 | 305 | 93.5 | Plus |
| 3R | 32079331 | 3R | 25680966..25681024 | 31..89 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:29 has no hits.
FMO04083.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:16 Download gff for
FMO04083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RA | 122..1233 | 31..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:27 Download gff for
FMO04083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RB | 149..1260 | 31..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:58 Download gff for
FMO04083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5028-RA | 122..1233 | 31..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:58 Download gff for
FMO04083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25680966..25681023 | 31..88 | 100 | -> | Plus |
| 3R | 25681121..25681198 | 89..166 | 100 | -> | Plus |
| 3R | 25681266..25682045 | 167..946 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:16 Download gff for
FMO04083.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21506688..21506745 | 31..88 | 100 | -> | Plus |
| arm_3R | 21506843..21506920 | 89..166 | 100 | -> | Plus |
| arm_3R | 21506988..21507767 | 167..946 | 99 | -> | Plus |
