FMO04085.5prime Sequence
1208 bp (1036 high quality bases) assembled on 2008-08-11
> FMO04085.5prime
GCATACCTTATACGAAGTTATCAGTCGACATGGAGCGTTGGATTGTCTTC
GGTGTCTGCTGTTGGTGCTGGCTGGCAGCATCCGCCCAGGCCTTGGAAAG
TGTCTTTGGAGCCTACAATCTGGAGCTGGAGTTTCCATCGCCGCAGGAAA
GACAGCGCGCGCTGAGAGATGGACTATACGATCCGGGCAGCGTGATCCCC
ATCGATGTGGACGTCTACTACAAGCATGGCGATGCCACACCCTCGATATT
CGTGACCATTCCGCGTTTTGCCAAGGGCGTTCCATACTCTCTGGCCTACG
TCACAAACGAAATGCGACCGAACGGGACTCTCCTGCAGGCTTATCCCAGC
TACGAGTGGCACAAATCCCACGGAGCCGACTGCAATGGATTGACTTCGGT
GTACCGCACACAGATAGACGAGTGCGGGCGCATGTGGATCCTGGACAGCG
GCGAGATCGACTTCATTCAGCACTGCCCGCCGCAGCTGTACGCTATTGAC
TTGGAAAGCGGAAAAGTCGCGCATCAGTACAAGATGCCCAAGCGATTGTA
CAAGGAGGGCGTGAGTCGCTTTGTCACGCCCACCGTGGAGCTGGATCCGC
ACAACTGCGATGTGGGATTCGTGTACATGGCGGACTCCATTGGAGACGGC
ATTGTGGTGTATGACGTGGCAGCCCAGCAGTCGTGGCGGATTGAGAACAA
GTTTACGTATCCTCATCCAGACTTCGGCACATTCACGATAGCAGGCGAGA
GCTTCCAGCTGTGGGACGGCACGGTGTCTACCACTCTACGCCCCACGGCT
TGGGTGGCCGGCGGGATGATGTATTTCCACTCTCTGTCCAGCGAGTGGCA
AATGGGCCATTTCCGTTGGATGTGGTCAACAACGGCAGCAACTGGCGGCT
GAACGATGTGAGCGCTGCCTTGGATCAGTTCCAGTTGCTGGGCAAGCGGG
AAGTCAATGCGTTGCGGCGGCCATGAGCGAGTCCGGCTTTCTGATCTGCG
GCCTGGTCAGCCGGCTAGCCGTTTGACTGGAACATTCGCACCGGCTACAG
CCATCAGATTCTGGTCATGCTGGTGGAAGATGAACACGACTGCAGTTCGC
CAGTGGAACTCAGATCGGGCACCACGAGGCAAGAGTACTGTGGGGCTGTC
AATCGCGTGCAAAGCTCGAGCGGCTCTGGACATCTCAATGGAATTACACT
TTACGCAA
FMO04085.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-d2-RA | 1341 | CG9891-RA | 62..1229 | 29..1181 | 5145 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23381509..23382392 | 226..1107 | 3950 | 98.2 | Plus |
| 2R | 25286936 | 2R | 23381258..23381454 | 29..225 | 985 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:11 has no hits.
FMO04085.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:03:46 Download gff for
FMO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d2-RA | 55..1155 | 20..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:15 Download gff for
FMO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d2-RA | 53..1153 | 20..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:13 Download gff for
FMO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d2-RA | 55..1155 | 20..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:13 Download gff for
FMO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23381250..23381454 | 22..225 | 98 | -> | Plus |
| 2R | 23381509..23382415 | 226..1128 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:03:46 Download gff for
FMO04085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19268773..19268977 | 22..225 | 98 | -> | Plus |
| arm_2R | 19269032..19269938 | 226..1128 | 97 | -> | Plus |
