FMO04086.5prime Sequence
518 bp (518 high quality bases) assembled on 2008-08-11
> FMO04086.5prime
TCTTACTGTTCTCCTAACGCTGATCTATGCCAGCCATGCGGCTGCGGGAT
TGAGCATTACAGTTCCGGGCACAAAGTGGTGTGGACCCGGGAACATAGCA
GCCAACTACGATGACCTGGGCACTGAGCGCGAAGTGGACACGTGCTGCCG
GGCGCACGACAACTGTGAGGAGAAGATTCCGCCGCTGGAGGAAGCCTTTG
GCCTGAGAAACGACGGGTTTTTCCCCATATTCTCGTGTGCCTGCGAGTCG
GCCTTCCGGAACTGCCTCACCGCTCTGCGAAACGGACACTCCCTGGCTCT
TGGCAAAATCTACTTCAACACCAAGGAGGTGTGCTTTGGCTACGGGCATC
CCATCGTTTCCTGCCAGGAGAAGCAGGCCGACCTGTTCGAGACACGATGT
CTCAACTACCGAGTGGACGAAGGTCAGCCGCAGCGCTGGCAGTTCTACGA
CTTGGCCCCTCTACACACACGTAAGCGGCAGCGAGGAGGACTCCCGAGAT
GCAAGCTTTCTAGACCAT
FMO04086.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30503-RB | 1842 | CG30503-RB | 1153..1651 | 1..500 | 2460 | 99.6 | Plus |
| CG30503-RA | 741 | CG30503-RA | 52..550 | 1..500 | 2460 | 99.6 | Plus |
| kappaB-Ras-RB | 1842 | CG1669-RB | 1153..1651 | 1..500 | 2460 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7444015..7444285 | 500..229 | 1295 | 99.3 | Minus |
| 2R | 25286936 | 2R | 7444349..7444576 | 228..1 | 1140 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:41:32 has no hits.
FMO04086.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:31 Download gff for
FMO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30503-RA | 52..557 | 1..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:20 Download gff for
FMO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RB | 1122..1627 | 1..508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:41 Download gff for
FMO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RB | 1153..1658 | 1..508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:41 Download gff for
FMO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7444011..7444285 | 229..500 | 97 | <- | Minus |
| 2R | 7444349..7444576 | 1..228 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:31 Download gff for
FMO04086.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3331516..3331790 | 229..500 | 97 | <- | Minus |
| arm_2R | 3331854..3332081 | 1..228 | 100 | | Minus |
