FMO04089.5prime Sequence
668 bp (668 high quality bases) assembled on 2008-08-11
> FMO04089.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGCAGCCAGCGAGGGAT
CGGCGGCGCGCATTCAGTTCAAGGCGCTGCGCGGATTTCCGGCCATCGGC
GATACCGCTGATAAGCTGGAGACACAGGCCTTTCTCGACGCCTCCAAGGA
GATAGTAACCGTCATAGAGAGCTTCGGCAAACTATTCACACCCGTGATCA
GCGACATGAACGGAAACATAAACAAACTGACGAAAGCCTACGGAGCGGAT
GTGGTCAAGTACCAGTATCTGGAGGATCTGATCGTGCTGAACGTGAACGT
GGACGACTTTGCGGCCAACGCGCTGCTCTGGCTGAAGCGCGGCCTGCAGC
TCATATGCACCTTCTTCGAGAACATCTACAACGATGCCCAGGCCAAGGAG
GCACTTAAGCAGCATCTGCAGGACGCGTACGAACGCACATTGAAGCCCTA
CCACGGCTTCATCGTCCAGAGCACAATCAAGATCATCTACAGTTGGGTGC
CCACGCGCAGCCAACTGCTGGGCCAGGGTGTCGCCCAGGCGGAGAACATC
GAGGTGCTGACCAGCTTCCTGCCGCGTATGCGCGCCCATCTGGACTCGAT
CGACGCCCTGCTGAAGGCGCACAACTTGGACGATGCACGAAAGGTGGCAA
GCTTTCTAGACCATTCGT
FMO04089.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6299-RE | 838 | CG6299-RE | 119..733 | 32..646 | 3075 | 100 | Plus |
| CG6299-RD | 1003 | CG6299-RD | 284..898 | 32..646 | 3075 | 100 | Plus |
| CG6299-RC | 987 | CG6299-RC | 273..887 | 32..646 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15466219..15466476 | 224..481 | 1290 | 100 | Plus |
| X | 23542271 | X | 15466541..15466707 | 480..646 | 835 | 100 | Plus |
| X | 23542271 | X | 15465858..15465993 | 32..167 | 680 | 100 | Plus |
| X | 23542271 | X | 15466067..15466124 | 166..223 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:27 has no hits.
FMO04089.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:14 Download gff for
FMO04089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6294-RA | 1826..2446 | 24..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:02 Download gff for
FMO04089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6299-RA | 288..908 | 24..646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:33 Download gff for
FMO04089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6299-RC | 267..887 | 24..646 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:33 Download gff for
FMO04089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15465852..15465993 | 24..167 | 97 | -> | Plus |
| X | 15466069..15466124 | 168..223 | 100 | -> | Plus |
| X | 15466219..15466476 | 224..481 | 100 | -> | Plus |
| X | 15466543..15466707 | 482..646 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:14 Download gff for
FMO04089.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15359885..15360026 | 24..167 | 97 | -> | Plus |
| arm_X | 15360102..15360157 | 168..223 | 100 | -> | Plus |
| arm_X | 15360252..15360509 | 224..481 | 100 | -> | Plus |
| arm_X | 15360576..15360740 | 482..646 | 100 | | Plus |
