FMO04090.5prime Sequence
415 bp (415 high quality bases) assembled on 2008-08-11
> FMO04090.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGAAGAACTTTC
AATACGAGAATATGCAGCCTCAGGCTCCGGGTTTCCAGGCACCGCCCAGT
TATGATAGCGCACCGCAGCAGGTCTATCCTCAGCTCCATCAGGGACAGGG
AGTGATATTGCAGGCTCCACCCAATGTCCTGGGCCAATGTCCATCCGTTG
CCACTTGTCCGAGCTGCGGCGTCCGCAGGGAGACGAAGGTGGAGTTCGAG
CCCAGCACCAAGACCCACCTGTTGGCCCTACTCATCTGCATGCTGGGGGG
CATTTGCTGCTGCTGCATTCCGTACTGCACCGACTCCTGCCAGTCGGCCA
AACACACCTGCACCAGCTGTGGAGCCTACGTGGGCACCTACAAGAACGCA
AGCTTTCTAGACCAT
FMO04090.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4250-RA | 616 | CG4250-RA | 54..416 | 35..397 | 1815 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 222..455 | 164..397 | 1170 | 100 | Plus |
| CG4250-RB | 655 | CG4250-RB | 54..183 | 35..164 | 650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22663988..22664122 | 164..298 | 675 | 100 | Plus |
| 2R | 25286936 | 2R | 22663745..22663874 | 35..164 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 22664174..22664274 | 297..397 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:13 has no hits.
FMO04090.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:16:20 Download gff for
FMO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 45..416 | 25..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:45 Download gff for
FMO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 49..420 | 25..397 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:54 Download gff for
FMO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4250-RA | 45..416 | 25..397 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:54 Download gff for
FMO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22664175..22664274 | 298..397 | 100 | | Plus |
| 2R | 22663734..22663874 | 25..164 | 95 | -> | Plus |
| 2R | 22663989..22664121 | 165..297 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:16:20 Download gff for
FMO04090.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18551239..18551379 | 25..164 | 95 | -> | Plus |
| arm_2R | 18551494..18551626 | 165..297 | 100 | -> | Plus |
| arm_2R | 18551680..18551779 | 298..397 | 100 | | Plus |
