FMO04091.5prime Sequence
1194 bp (1010 high quality bases) assembled on 2008-08-11
> FMO04091.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGAACCCACTAGGAAT
GTTGAGCCTGGGCTTAATGGTGTGCCTTATCGGCGCCTTCAGCCGGATTG
CATCGGCCAAGCTGGAGGAGAAGTTCTCGTGGAAGCAACTGGCCTTCGAT
TGGCCCACTCCGGAGGCCGAGGCGGAGGCCAAGTCGAATGGCCACTACAT
CGTGGAGAACAACCTGCCGCTGGGCGTGGAGCGTTGGCAAAACAGAATCT
TTGTCACTGTGCCAAGATGGAAGGCTGGTGTTGCTGCCACACTCAACTAC
ATCGACATTAATTCGACGGAGAAGTCGCCAAAGCTGCATCCGTATCCCAG
TTGGGAGGCCAACAAGCTGCCCATCGATGTGCAGCCACAGGACCAAAAGA
CACCATCCGGTGGACGTCTGGACGCGGACAAGGCTCAAGATGCCGGCATC
CAGCTGAAGGACAACTCCACTGTCATTTCCACCTTCCGAATTCAAGTCGA
CGTATGCGATCGCCTGTGGGTGCTCGATACTGGCTTGGCCGACATCCTGG
GCAGTCCCAAGCAGATTACGCCCAATTCAATCCTGGTTTTCGACTTGAAA
ACAGATACTTTACTGCGCCGTTTCACCATTCCCGCTGATCAGACCAAAGA
GGACTCGTTCTTTGCGAATATTGTTGTGGATGCGGACCGCTCGGAGTGCC
AAGATGCCTTTGCTTACATTCCGGATTTGGGTGCCTACGGTGTGATTGTG
TACTCCCTGAGGAACGACAAATCCTACCGCGTCAAGCACAACTTCTTCCA
CTTCGATCCTCTGCATGGTGATTTCAATGTGGGCGGCGTGACTTCCAGTG
GACGGATGGCGTTTTGGGCTGGCCGTGGGCCCAATGAATCCAGATCACTC
CAAGGACATTTATTTCCATGCCCTGGCCAGTACCAAGGAGTTCAAGGTTT
CGACCGCGTGCTGCAAACGAATCACACGTGACCGCTGGCGATTCGAATTA
CGATTTTAAATACGTGGGTGACCGTGCATGAATGCCAGTCCACCGCCCGA
GGTCTTGACCCGAACCGCGTCATCTTTCTATCGCAGGGAACCAGACGCAT
TGCTTGTTGAACTCAGGTCAACCTTCGGAACCTAGCCTATCGATCGATTC
GCAACTTGCTTCCATGAATGAACCCGACACATGTGAAGGACCCA
FMO04091.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-c-RB | 1600 | CG4182-RB | 171..1258 | 34..1109 | 5005 | 98.3 | Plus |
| yellow-c-RA | 1522 | CG4182-RA | 93..1180 | 34..1109 | 5005 | 98.3 | Plus |
| CIAPIN1-RA | 2358 | CG4180-RA | 1712..2121 | 674..265 | 2050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15036584..15036993 | 265..674 | 2050 | 100 | Plus |
| 2L | 23513712 | 2L | 15037051..15037431 | 673..1047 | 1575 | 97.9 | Plus |
| 2L | 23513712 | 2L | 15035564..15035796 | 34..266 | 1165 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:35:51 has no hits.
FMO04091.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:28 Download gff for
FMO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-c-RA | 93..1188 | 34..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:17:03 Download gff for
FMO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-c-RA | 94..1189 | 34..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:25 Download gff for
FMO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-c-RA | 93..1188 | 34..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:25 Download gff for
FMO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15035564..15035796 | 34..266 | 100 | -> | Plus |
| 2L | 15036586..15036991 | 267..672 | 100 | -> | Plus |
| 2L | 15037051..15037507 | 673..1115 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:28 Download gff for
FMO04091.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15035564..15035796 | 34..266 | 100 | -> | Plus |
| arm_2L | 15036586..15036991 | 267..672 | 100 | -> | Plus |
| arm_2L | 15037051..15037507 | 673..1115 | 95 | | Plus |
