FMO04092.5prime Sequence
525 bp (525 high quality bases) assembled on 2008-08-11
> FMO04092.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTCGACAAAT
TCAACACAAACGCATTCATATCGTTTGGACTGGGATTCATACTGATGTGG
CTGAGCGAAGCCACGGAAGCCCACATGAACTACACAGCCAAGCCGCGAGT
AGTTCTTCCGCCTAATTATGTCAAGGAAATACGACCGCCCTCGAAGAAGG
GCTCACCAGTGATAGTAGACTTTAGCATATTCGTTGTAGATATTAACTCA
ATTAACGTAGAGGATATGGACTTTAGAGTAGACATGTTTATACATCAGCG
CTGGCTGGAGTCGCGTCTGGAGATCCCAGATGACATATTCGAGGAGGGCG
ACGACTACGTGACGCTGCTTCCAGAGGTCTTTGAGAATTTTTGGCAGCCG
GATCCGTACTTTCTTAATTCCAAAATTGCCGAAATAGCGACACTGACCCA
CAAGTTCACGTCGGTGACGCTCTACAAGAACAAAACGGTGCGCTATGCGG
CCCGGATGCATGCGATCATCGCCTG
FMO04092.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12344-RD | 2719 | CG12344-RD | 155..643 | 37..525 | 2445 | 100 | Plus |
| CG12344-RC | 2731 | CG12344-RC | 155..643 | 37..525 | 2445 | 100 | Plus |
| CG12344-RB | 2831 | CG12344-RB | 267..755 | 37..525 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10831378..10831534 | 431..275 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 10831614..10831714 | 276..176 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 10829867..10829961 | 525..431 | 475 | 100 | Minus |
| 2R | 25286936 | 2R | 10833125..10833202 | 176..99 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 10833807..10833870 | 100..37 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:58:13 has no hits.
FMO04092.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:03 Download gff for
FMO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RB | 261..755 | 30..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:16:46 Download gff for
FMO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RA | 261..755 | 30..525 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:45:52 Download gff for
FMO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12344-RB | 261..755 | 30..525 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:45:52 Download gff for
FMO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10829867..10829960 | 432..525 | 100 | <- | Minus |
| 2R | 10831378..10831532 | 277..431 | 100 | <- | Minus |
| 2R | 10831614..10831713 | 177..276 | 100 | <- | Minus |
| 2R | 10833125..10833201 | 100..176 | 100 | <- | Minus |
| 2R | 10833808..10833873 | 30..99 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:03 Download gff for
FMO04092.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6717372..6717465 | 432..525 | 100 | <- | Minus |
| arm_2R | 6718883..6719037 | 277..431 | 100 | <- | Minus |
| arm_2R | 6719119..6719218 | 177..276 | 100 | <- | Minus |
| arm_2R | 6720630..6720706 | 100..176 | 100 | <- | Minus |
| arm_2R | 6721313..6721378 | 30..99 | 94 | | Minus |
