FMO04093.5prime Sequence
586 bp (586 high quality bases) assembled on 2008-08-11
> FMO04093.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAAACTTAA
GGCAAACCAAAGAGTCATCGGAATTTAAAATGGGGACTTCTCTGGATAAT
AACAAACTGGCATCGTTGGGTGCCACAAACAAGCACCGGCTGCAGAACAC
ATGGACCCTGTGGGGCGTAAAGTACGACCCTGAAATATCATGGGAGGACA
TGCTGAAGGAGATTGACAGCTTCAATACCGTCGAGGACTTCTGGAACCTG
TATTTCCGCATCGATACGCCATCCAAGCTCAACCGCGGCTGTGATTACAT
GCTCTTCAAGAAGGGCATTCGCCCCATGTGGGAGGATCCGCCGAACAAGG
GCGGAGGTCGTTGGACATATAAAGTGGATAAAAGGTCCACAGCCGAACTG
GACAAAACTTGGCTGGACGTGCTTCTTTGCATGATTGGCGAGGCCTGCGA
TCACTGCGATCAGATTTGTGGGGCTTTTGTCAGGATTCGCAAAAAATATC
AACAAAATCTCCGTATGGACAAGGCAGACGCGGGCGATGAGTGTAACGAA
CAGTGCGCAAGCTTTTCTAGACCATTCGTTTGGCGC
FMO04093.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF4E-6-RC | 676 | CG1442-RC | 110..632 | 34..556 | 2555 | 99.4 | Plus |
| eIF4E-6-RB | 686 | CG1442-RB | 120..642 | 34..556 | 2555 | 99.4 | Plus |
| eIF4E-6-RA | 677 | CG1442-RA | 111..633 | 34..556 | 2555 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29026483..29027005 | 556..34 | 2505 | 99.4 | Minus |
| 3L | 28110227 | 3L | 9400583..9400713 | 321..191 | 190 | 76.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:18 has no hits.
FMO04093.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:06 Download gff for
FMO04093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-6-RA | 103..636 | 24..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:12 Download gff for
FMO04093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-6-RA | 103..636 | 24..560 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:12 Download gff for
FMO04093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF4E-6-RA | 103..636 | 24..560 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:12 Download gff for
FMO04093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29026479..29027013 | 24..560 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:06 Download gff for
FMO04093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24852201..24852735 | 24..560 | 98 | | Minus |
