FMO04094.5prime Sequence
385 bp (385 high quality bases) assembled on 2008-08-11
> FMO04094.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGATGCCTTTGATCCAC
GCTCGATTATCAACGGCGGCATGCTGAAGCAGTTTTCCGGCCAAACCGTG
AGCATAATGGTTCGCGTGGAGAGCGTCGCGGGATCCACTTTGCTGGCCAG
TTCCACAGACAACCACAAGCTAAAGATCAATCTGCCGGGTGAGCTGGGCG
CCGCCGAAGGGGCCTGGGTCGAGGTCATTGGAGTGCCCCATGGTGCGGAC
ACCCTCAGGGCCAAGGAGGTCATCGAGTTTGGCGGCGAGAACATCGACTT
CGATAAGGATGGCTATAATGGATTGAGCCACCTGATTAACAATGTCAAGG
CCTTCTATCGCAGCGGCGCAAGCTTTCTAGACCAT
FMO04094.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RPA3-RB | 673 | CG15220-RB | 87..422 | 32..367 | 1680 | 100 | Plus |
| RPA3-RA | 541 | CG15220-RA | 87..422 | 32..367 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11615516..11615754 | 270..32 | 1195 | 100 | Minus |
| X | 23542271 | X | 11615348..11615448 | 367..267 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:26 has no hits.
FMO04094.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:42 Download gff for
FMO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15220-RA | 80..422 | 25..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-11 09:18:11 Download gff for
FMO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15220-RA | 80..422 | 25..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:10 Download gff for
FMO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RPA3-RA | 80..422 | 25..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:10 Download gff for
FMO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11615348..11615446 | 269..367 | 100 | <- | Minus |
| X | 11615518..11615766 | 16..268 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:42 Download gff for
FMO04094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11509381..11509479 | 269..367 | 100 | <- | Minus |
| arm_X | 11509551..11509799 | 16..268 | 96 | -> | Minus |
