FMO04102.5prime Sequence
724 bp (724 high quality bases) assembled on 2008-08-22
> FMO04102.5prime
TAGCATACCTTATACGAAGTTATCAGTCGACATGCCATCGGGAAGAGTCA
GAAAACCTAGAACCTCGCTCACTTTGGAAGAGAAAATGGAGGTAATCCAG
TCCCAGGAGCGAAACAAGCTATCGGTTCGGGATCTGGCCAAGAGGTTTAA
CATTGGAAAGACACAAGCAGCAGACATTTTGAAGCACAAACAGTCGATTA
AAGAGGGTCTGTTGAGTGGAGAACTTAAGTTGAATCAGATGCGGAGGAAT
CCCCTCTCTCAGCGGGGCGCCCAAATCGATGAGATGTGCTTTGATTGGTT
CTCCCGTGTCCGTACCGAGAATATACCCATATCGGGGGAAATGGTGCGGA
AGAAGGCCAAGCAGTTAGCTGTGGAGCTGGGCCACTCCAATTTCTCTGCC
TCCTCCGGATGGCTGGAGAAATGGCGAAAGCGACACAACGTCCGATACAA
TGACACCGGTGACAGCCTGGATCTGCAGGAGTTCGAGGCGATTCTGGTGA
AAAGCGAACCCATCTCGAATAAGGACGATTGTGATGAGCCATACCCCGTG
ACTCTGATAGAGCCTATCTATTCCACCGAGGAGGCCATGATGCAGCTGGC
CCGGCTGAAGGAGTTCGCAAAGGATGACTATGCTTCCTACCAGCAGTTGA
TCAGTCTGGAAAATCAATGGAGCTGGAAATGGAACATCTTTAAGAAGGAG
CTTCCCGCAAGCTTTCTAGACCAT
FMO04102.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cag-RB | 1025 | CG12346-RB | 147..821 | 32..706 | 3375 | 100 | Plus |
| cag-RA | 1324 | CG12346-RA | 446..1120 | 32..706 | 3375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10893238..10893801 | 706..143 | 2820 | 100 | Minus |
| 2R | 25286936 | 2R | 10893855..10893969 | 146..32 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:11 has no hits.
FMO04102.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:31 Download gff for
FMO04102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 32..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:25 Download gff for
FMO04102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 392..1066 | 32..706 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:38 Download gff for
FMO04102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cag-RA | 446..1120 | 32..706 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:38 Download gff for
FMO04102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10893238..10893799 | 145..706 | 100 | <- | Minus |
| 2R | 10893857..10893969 | 32..144 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:31 Download gff for
FMO04102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6780743..6781304 | 145..706 | 100 | <- | Minus |
| arm_2R | 6781362..6781474 | 32..144 | 100 | | Minus |
