FMO04105.5prime Sequence
368 bp (368 high quality bases) assembled on 2008-08-22
> FMO04105.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGAAATTGATG
CTAGTCGTTGGCTCGATAGCCCTTCTCCTGGCCCTGGCCAGTGCCCGGCC
GCAAAATGATGTGGAAGTTCTTGAGTACGAATCGGAGAACACCGGCCTCG
GCGGCTACAAGTTCAGCTACAAACTGAGCGATGGCACCAGTCGAACAGAG
GAGGGCGTGGTCAACAACGCGGGCACCGACAACGAATCCATATCCATTCG
GGGATCCGTCACCTGGGTGGCTCCCGATGGCCAAACCTACACCATTAACT
TTGTGGCCGACGAGAACGGTTTTCAGCCGGAGGGTGCCCATCTGCCCAAG
GCAAGCTTTCTAGACCAT
FMO04105.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp65Aa-RA | 615 | CG10297-RA | 65..381 | 34..350 | 1585 | 100 | Plus |
| Cpr65Av-RA | 642 | CG32405-RA | 348..440 | 255..347 | 195 | 80.6 | Plus |
| Lcp65Ac-RA | 505 | CG6956-RA | 330..403 | 276..349 | 190 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6152284..6152587 | 350..47 | 1520 | 100 | Minus |
| 3L | 28110227 | 3L | 6139425..6139517 | 347..255 | 195 | 80.6 | Minus |
| 3L | 28110227 | 3L | 6143799..6143872 | 275..348 | 190 | 83.8 | Plus |
| 3L | 28110227 | 3L | 6145218..6145291 | 276..349 | 190 | 83.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:02 has no hits.
FMO04105.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:00 Download gff for
FMO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp65Aa-RA | 62..381 | 31..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:28 Download gff for
FMO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp65Aa-RA | 62..381 | 31..350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:23 Download gff for
FMO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp65Aa-RA | 62..381 | 31..350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:23 Download gff for
FMO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6152284..6152586 | 48..350 | 100 | <- | Minus |
| 3L | 6152668..6152684 | 31..47 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:00 Download gff for
FMO04105.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6145384..6145686 | 48..350 | 100 | <- | Minus |
| arm_3L | 6145768..6145784 | 31..47 | 94 | | Minus |
