FMO04108.5prime Sequence
384 bp (384 high quality bases) assembled on 2008-08-22
> FMO04108.5prime
ATACCTTATACGAAGTTATCAGTCGACATGAAGGTATTCATTGTACTCTG
CGCACTGGTGGCCTGTGTTTCGGCCGGATTGGTCCGATCCTCGGGCTGGG
GATCGAATCCTTGGGGCGGCAGCAGCTCCGGATGGAATAGTGGCTGGGTT
GCCCAGCAGCCGCAAGTCATCAAGGTCATAAAGATCGGAGGAGGCGGCGG
CTCCGGATGGGGCGGAAACTCTGGATGGGGCGGTAACTCCGGATGGGGTA
GCAACTCCGGATGGGGCGGCAACTCCGGATGGGGTGGAAACTCTGGTTGG
AGCAGCGGCAACTCCGGATGGAACAGCAATGGATGGTCCAGTTCCAGCTC
CAATAGTGGATGGTGGGCAAGCTTTCTAGACCAT
FMO04108.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12998-RB | 1121 | CG12998-RB | 315..653 | 28..366 | 1695 | 100 | Plus |
| CG12998-RA | 612 | CG12998-RA | 99..437 | 28..366 | 1695 | 100 | Plus |
| CG12998-RB | 1121 | CG12998-RB | 488..569 | 237..321 | 225 | 85.9 | Plus |
| CG12998-RB | 1121 | CG12998-RB | 524..608 | 201..282 | 225 | 85.9 | Plus |
| CG12998-RA | 612 | CG12998-RA | 272..353 | 237..321 | 225 | 85.9 | Plus |
| CG12998-RA | 612 | CG12998-RA | 308..392 | 201..282 | 225 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17218981..17219319 | 28..366 | 1695 | 100 | Plus |
| X | 23542271 | X | 17219154..17219235 | 237..321 | 195 | 84.7 | Plus |
| X | 23542271 | X | 17219190..17219274 | 201..282 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:59:52 has no hits.
FMO04108.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:49 Download gff for
FMO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12998-RA | 93..440 | 20..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:33 Download gff for
FMO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12998-RA | 96..443 | 20..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:14 Download gff for
FMO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12998-RA | 95..442 | 20..371 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:14 Download gff for
FMO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17218977..17219324 | 20..371 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:49 Download gff for
FMO04108.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17113010..17113357 | 20..371 | 98 | | Plus |
