FMO04109.5prime Sequence
352 bp (352 high quality bases) assembled on 2008-08-08
> FMO04109.5prime
TAGCATACATTATACGAAGTTATCAGTCGACATGGGCATTCCGGATATCC
GACTGCTGGTGACGCTGGATTTCGAGGTCTATGGACATGTACAAGGCCTG
AATCTCACGAAAGACACCCGCGATCGCTGCACCAAGGCGGGAATCACTGG
CTGGGTGAAGAACAGCAAACAGGGCACCATTGTGGGCAAGATGCAGGGGC
CCAAGGAGGAGGTGGACAAGATGATCACCTGGCTGTCCACTGAGGGCTCA
CCCGGCTGCCAAATCGATCGCTGTGAGGTCCGGAACCAGGGCAATCTCAG
CCGACTGGACTACAAGGACTTTGCCATTAGGTTTGCAAGCTTTCTAGACC
AT
FMO04109.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14022-RB | 617 | CG14022-RB | 207..514 | 27..334 | 1525 | 99.7 | Plus |
| CG14022-RA | 652 | CG14022-RA | 242..549 | 27..334 | 1525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5328252..5328381 | 223..94 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 5328078..5328189 | 334..223 | 560 | 100 | Minus |
| 2L | 23513712 | 2L | 5328569..5328638 | 96..27 | 335 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:31:51 has no hits.
FMO04109.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:10 Download gff for
FMO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14022-RA | 237..549 | 22..334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-08 10:13:46 Download gff for
FMO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14022-RA | 228..540 | 22..334 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:18 Download gff for
FMO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14022-RA | 237..549 | 22..334 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:18 Download gff for
FMO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5328078..5328189 | 223..334 | 100 | <- | Minus |
| 2L | 5328253..5328379 | 96..222 | 100 | <- | Minus |
| 2L | 5328570..5328643 | 22..95 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:10 Download gff for
FMO04109.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5328078..5328189 | 223..334 | 100 | <- | Minus |
| arm_2L | 5328253..5328379 | 96..222 | 100 | <- | Minus |
| arm_2L | 5328570..5328643 | 22..95 | 96 | | Minus |
