FMO04112.5prime Sequence
615 bp (615 high quality bases) assembled on 2008-08-22
> FMO04112.5prime
TCAGTCGACATGGTGCCTGCGGCCGTCAAGCTGTTGCAGGCCTCGCTGGG
CCAGTGGCGTCGAGGGAGCAAGCTGCATCCCATGGCCAAGGGCGCGCTCA
CGTACGCGGTCATGTGGCCGGCGGGCAGCCTGATCCAGCAGGCTATGGAG
GGACGCAAGCTGCGCGAGTACGACTGGGCCAGGGCGTTACGTTTCAGCTT
GTTTGGAGCTCTGTACGTGGCGCCCACTCTGTACGGCTGGGTGCGGCTCA
CCAGCGCCATGTGGCCGCAGACTAATCTGCGCACGGGCATCGTTAAGGCC
ATCACGGAACAGCTTTCCTACGGACCATTCGCTTGCGTAAGCTTTTTCAT
GGGAATGAGCTTGCTGGAGCTGAAGACCTTTAGTCAGGCCGTGGAAGAGA
CGAAGGAGAAGGCGGCGCCCACGTACAAGGTCGGCGTATGCATCTGGCCT
ATCCTGCAGACCATTAACTTCTCGCTGGTGCCGGAACACAACCGCGTGGT
GTTTGTAAGCATTTGCAGCCTGATGTGGACAATTTTCCTGGCGTACATGA
AGACGCACCACGAGGAGCAGTCGAACTCCGCGGTTCTGCCTTGTACAGCA
AGCTTTCTAGACCAT
FMO04112.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14777-RF | 1474 | CG14777-RF | 809..1396 | 10..597 | 2925 | 99.8 | Plus |
| CG14777-RC | 799 | CG14777-RC | 134..721 | 10..597 | 2925 | 99.8 | Plus |
| CG14777-RE | 855 | CG14777-RE | 190..777 | 10..597 | 2925 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1468445..1468614 | 428..597 | 835 | 99.4 | Plus |
| X | 23542271 | X | 1467811..1467965 | 10..164 | 775 | 100 | Plus |
| X | 23542271 | X | 1468249..1468384 | 296..431 | 680 | 100 | Plus |
| X | 23542271 | X | 1468052..1468186 | 164..298 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:16 has no hits.
FMO04112.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:40 Download gff for
FMO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14777-RD | 234..832 | 1..605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:21 Download gff for
FMO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14777-RB | 184..782 | 1..605 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:20 Download gff for
FMO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14777-RE | 184..782 | 1..605 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:20 Download gff for
FMO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1468251..1468382 | 298..429 | 100 | -> | Plus |
| X | 1468447..1468609 | 430..592 | 99 | -> | Plus |
| X | 1467805..1467964 | 1..163 | 97 | -> | Plus |
| X | 1468052..1468185 | 164..297 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:40 Download gff for
FMO04112.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1362284..1362415 | 298..429 | 100 | -> | Plus |
| arm_X | 1362480..1362642 | 430..592 | 99 | -> | Plus |
| arm_X | 1361838..1361997 | 1..163 | 97 | -> | Plus |
| arm_X | 1362085..1362218 | 164..297 | 100 | -> | Plus |
