FMO04113.5prime Sequence
584 bp (584 high quality bases) assembled on 2008-08-22
> FMO04113.5prime
TGAATCATCCTTCAGTGCACTAAAGGGGGGATCTCGAGGGATCCATAACT
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCGACAGCAGT
TCCCATGAAAAAAAACTGGAGCCCCAGCATGAAACACAACGATATGGAGC
GATGGATTTGCATATATCCCGCCTACATCAATAGGAAAAAGACACGCCAG
GAGGGTCGACGGCTGCCCAAGGAGAACTGTGTAGACAATCCCAGCTATAT
TGAGATTCGCGATGTGCTGTCCGTTTCCAACTTGCAGTTCCTCATGGAGA
ACAAGAAGTACTGTCGCGAGAACAGCAGCGAGATGGAGTTCCGTGGTCGT
GTGCGCGTCCAGCTGCGTAATGTCGATGGCACTTTGTACAATAATGACTT
TCCCACGCGCGAGTCCATCATGCTGCATATCGCCAGCAAGATACCGCAGC
TGAAGACGCGACAGAACAAATCCGGCGACTCGTACCACCAGCAGTCGCAG
CCACAGTCGAATGCATCCGGATCTGGGGGTGGTGGTGGCGGCAAGAAGGG
AAAGGGCAAGCGCCGCGCAAGCTTTCTAGACCAT
FMO04113.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Srp19-RA | 653 | CG4457-RA | 114..593 | 87..566 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7347370..7347785 | 566..151 | 2080 | 100 | Minus |
| 3L | 28110227 | 3L | 7347857..7347921 | 151..87 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:11 has no hits.
FMO04113.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:00 Download gff for
FMO04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 112..602 | 84..574 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:39 Download gff for
FMO04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 92..582 | 84..574 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:23 Download gff for
FMO04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Srp19-RA | 112..602 | 84..574 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:23 Download gff for
FMO04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7347361..7347784 | 152..574 | 99 | <- | Minus |
| 3L | 7347857..7347923 | 84..151 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:00 Download gff for
FMO04113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7340461..7340884 | 152..574 | 99 | <- | Minus |
| arm_3L | 7340957..7341023 | 84..151 | 98 | | Minus |
