FMO04114.5prime Sequence
1102 bp (1075 high quality bases) assembled on 2008-08-22
> FMO04114.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTCATGAGT
CGAGCGCTTTGCCGGAGCTGGCTACCCCAGGTGGCCCGCAGATGTCATGC
TAATGTGAATGTGCCAATCCTGCGGATAAACTCTGGTCATCCGGCGGCGA
GGTCATGTCGGCAGATTCACAGCAACCGAAAACAGAGCAGCAACCTGAAG
CCGACGACTGGGGAGCCTGCGGCAGCGGAGCAGAACACCCCGGTGCCGGT
GAACAATGTGATCAAGGCGGTGGCCTTCACGGGAGCATTTACGGTCGGCT
GCTTTGCGGGTGCCACCATCCTGGAGTACGAGAACACACGTAGCCTAATC
CTAGAAAAGGCTCGCCAGGCGAGATTCGGTTGGTGGCAGAGTCGTTCGCT
GGCGGACAGGGATTACTGGACACAGATCAAACAAGACATCCGGCGGCACT
GGGACTCACTGACACCCGGCGACAAGATGTTTGCTCCTATCTTACTCTGC
AATTTGGTGGCCTTCGCCATGTGGCGGGTGCCCGCTCTGAAATCCACAAT
GATTACCTACTTCACATCCAATCCAGCGGCGAAAGTCGTCTGCTGGCCCA
TGTTCCTGTCCACATTCAGCCATTACTCGGCTATGCACCTTTTCGCCAAT
ATGTACGTGATGCACAGCTTTGCCAACGCTGCGGCTGTATCGTTGGGTAA
AGAGCAATTCTTAGCGGTCTACCTCAGCGCCGGCGTCTTCTCCAGTCTGA
TGAGCGTGCTCTACAAGGCGGCCACGAGTCAGGCGGGGATGTCCCTGGGT
GCGTCTGGAGCTATAATGACACTGCTGGCCTATGTATGCACCCAGTATCC
GGACACACAACTTAGCATTCTCTTTCTACCCGCGTTGACATTCTCCGCTG
GAGCTGGTATTAAAGTGCTAATGGGCATCGACTTTGCTGGCGTCGTGATG
GGCTGGAAGTTCTTCGATCACGCAGCGCATTTGGGGGCGCCATGTTTGGC
ATCTTGGGGCCACGTATGGGGCACAGATATGGGCAAGCGCATGGTCTACT
GATTACTACCATGACCTGGCGCCGGAACGAGCAAAAGCAGCTTTTACGAA
CA
FMO04114.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rho-7-RB | 1533 | CG8972-RB | 119..1160 | 39..1076 | 5050 | 99.3 | Plus |
| rho-7-RA | 1328 | CG8972-RA | 119..1160 | 39..1076 | 5050 | 99.3 | Plus |
| CG34231-RC | 1494 | CG34231-RC | 1122..1342 | 803..583 | 1105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11988002..11988296 | 582..288 | 1475 | 100 | Minus |
| 2R | 25286936 | 2R | 11987281..11987501 | 803..583 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 11988362..11988563 | 287..86 | 1010 | 100 | Minus |
| 2R | 25286936 | 2R | 11987027..11987227 | 1002..803 | 955 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11988623..11988669 | 85..39 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:59 has no hits.
FMO04114.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:09 Download gff for
FMO04114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-7-RA | 107..1170 | 29..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:41 Download gff for
FMO04114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-7-RA | 76..1139 | 29..1086 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:38 Download gff for
FMO04114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rho-7-RA | 107..1170 | 29..1086 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:38 Download gff for
FMO04114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11987027..11987226 | 804..1002 | 99 | <- | Minus |
| 2R | 11987281..11987501 | 583..803 | 100 | <- | Minus |
| 2R | 11988002..11988296 | 288..582 | 100 | <- | Minus |
| 2R | 11988362..11988563 | 86..287 | 100 | <- | Minus |
| 2R | 11988623..11988681 | 29..85 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:09 Download gff for
FMO04114.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7874532..7874731 | 804..1002 | 99 | <- | Minus |
| arm_2R | 7874786..7875006 | 583..803 | 100 | <- | Minus |
| arm_2R | 7875507..7875801 | 288..582 | 100 | <- | Minus |
| arm_2R | 7875867..7876068 | 86..287 | 100 | <- | Minus |
| arm_2R | 7876128..7876186 | 29..85 | 93 | | Minus |
