FMO04116.5prime Sequence
698 bp (694 high quality bases) assembled on 2008-08-22
> FMO04116.5prime
TACAACTTCGATATGCCAGAATTTGGCCAGGAACTGAATTTCCAAACCTT
CGACAACACACAGGCCTCAGTGCCGCCGAACTACGATGCGTCCTATGCCC
AACCGCCGAGCCAAGGCTTGGGTGGCTTCTACGATCCCACGGCCTACACC
GACACGAGCTACGGACAGGACAAGAGCGGAAAGTCAGCTGCTGGCGGAGG
AGCCGGCAACGAATTCGATGATGAGCCTCCACTGCTGGAAGAGCTGGGCA
TCAATCCGAATCACATCTTCCAAAAGACGCTCGCCGTGCTGAATCCGCTG
CGCGGTACCGACCAGCAAATCCTCCAGGATACTGACATGGCGGGTCCACT
GGTCTTTTGCCTCACACTTGGCGGCTTCCTGCTGCTGAGCGGTAAGGTGA
CGTTCTCGTACATCTACGGCATCGGCGTAATGGGCTGCATCTTCTTCTAC
TGCCTGCTGTCCCTGATGGTCAGTCGGTCGCAGGTTACCTTCAGAGCAGT
GGCCTCCGTGCTGGGCTATTGTCTGCTGCCCATGGTGGTGCTGTCGGGCA
TCAACATTTTAATCACCATTCAGGGCACACTCGGCCTAATTGTGAGCGGC
ATCTCCATATTCTGGTGCGCCATATCGGCCTCGAAACTGTTCTCACCGCC
TTCTCATGGACCATCACAGCTGCTGATTGCCTATCGTGTGCGGTGCTC
FMO04116.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12404-RA | 1207 | CG12404-RA | 155..856 | 1..698 | 3380 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13000179..13000384 | 241..36 | 1030 | 100 | Minus |
| 2L | 23513712 | 2L | 12997461..12997647 | 573..387 | 920 | 99.5 | Minus |
| 2L | 23513712 | 2L | 12997813..12997925 | 387..275 | 565 | 100 | Minus |
| 2L | 23513712 | 2L | 12994108..12994237 | 698..573 | 435 | 96.2 | Minus |
| 2L | 23513712 | 2L | 12999727..12999763 | 276..240 | 185 | 100 | Minus |
| 2L | 23513712 | 2L | 13000446..13000481 | 36..1 | 180 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:15:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 3181..3223 | 448..406 | 116 | 74.4 | Minus |
FMO04116.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:02 Download gff for
FMO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12404-RA | 155..856 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:45 Download gff for
FMO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12404-RA | 151..852 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:19 Download gff for
FMO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12404-RA | 155..856 | 1..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:19 Download gff for
FMO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12994108..12994237 | 573..698 | 96 | <- | Minus |
| 2L | 12997462..12997646 | 388..572 | 99 | <- | Minus |
| 2L | 12997813..12997923 | 277..387 | 100 | <- | Minus |
| 2L | 12999727..12999761 | 242..276 | 100 | <- | Minus |
| 2L | 13000179..13000384 | 36..241 | 100 | <- | Minus |
| 2L | 13000447..13000481 | 1..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:02 Download gff for
FMO04116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12994108..12994237 | 573..698 | 96 | <- | Minus |
| arm_2L | 12997462..12997646 | 388..572 | 99 | <- | Minus |
| arm_2L | 12997813..12997923 | 277..387 | 100 | <- | Minus |
| arm_2L | 12999727..12999761 | 242..276 | 100 | <- | Minus |
| arm_2L | 13000179..13000384 | 36..241 | 100 | <- | Minus |
| arm_2L | 13000447..13000481 | 1..35 | 100 | | Minus |
