FMO04117.5prime Sequence
1178 bp (870 high quality bases) assembled on 2008-08-22
> FMO04117.5prime
GAGAATCCCTTCGGGGAGCCCAATCTGGACAATCCGTTTGCGGACCCCGC
CATCCAGCAGGCACGACGACTCCAGAGCGGCGCCGCCCTTGTCTCTCTTG
AGGATTACAATCCATTCGAGGAGCAGGCCAAGCCGCAGCTGCAGATCAAC
TCAACGAACACGGCGGCGGTGGTCCAGCCGCTATCGCAGAACATTCCGCC
CCCGCAGACCAGTTCCCTGGGCGCCTCGGCGCCTAGCACCAGCATACAGA
TCACCTCGGAGGAGCTGCAGCGCCGGCAGGAGGAGTTGGACCGCAAGGCC
GCCGAACTGGACCGCCGCGAGCAGCAGCTACAGGGCAATGTGCCGCAGCT
GAACAACTGGCCACCGCTGCCGGATAACTTTTGTGTAAAGCCGTGCTTCT
ACCAGGACTTCGAGGTGGAGATACCGCCCGAGTTCCAGAAACTGGTCAAG
CGATTGTATTACATTTGGATTTTTTACACCATGACGTTGTTGGCCAACGT
GATAGGCGGTCTAATTTTGCTGTTCCACGCTGGCGAATTCGAGACCTTCT
TCCTGGCCATCTTCTACACGATGCTCTTCTCGCCCGCCTCCTATGTCTGC
TGGTTCCGACCGGCGTACAAGGCATTCCGGCAACGATTCGAGCTTCAACT
TTCATGGTCTTCTTCTTCATCTACTTCTTTCAAACGCTGTACTCGATTGT
GCAGGCGGTGGGCTTCAACAAGATGGGCTACTGTGGCTTTAATTACGGCC
ATCGAGCAGTTCGATGGACAAGCGTCGGGTATTATCGTCGGCATTCTGCT
GTTGAACGTGCATTCTGTTTTCCCAGCGGTGCCGTGGCCATGTGCTGATG
ATCACAAGAATTCACTCGATCAACGCAGCACCAGGGGCAGTATTGGCCAT
GGCCCAGGCGGAGTCCACACCGAGTTTCTGCGCATACCGCAGGCCAGAAG
CAGCCCCTCGGCGGTAATCAGGCATAATTCCATTCGACACAGCAGGAACG
CAGCTTTTCTAACCATCTGTTGGGCCGGCGGAGCCAGGTAGGTGGTCTAA
TCTTAAATCTAATCCTAACCTCTATTCACACTAGCCTAAGGAACCTGGTC
ATGAATAGGCTGGATTCCCCAATAAAAAAGCCCGGGGAACCGAAGGTTCG
ACATTCCAAGAGATTTTGAGCTTATATG
FMO04117.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scamp-RC | 2322 | CG9195-RC | 138..1102 | 1..962 | 4300 | 97.3 | Plus |
| Scamp-RA | 2391 | CG9195-RA | 138..1102 | 1..962 | 4300 | 97.3 | Plus |
| Scamp-RD | 2813 | CG9195-RD | 830..1524 | 271..962 | 2950 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15449281..15449509 | 270..42 | 1145 | 100 | Minus |
| X | 23542271 | X | 15447499..15447831 | 934..602 | 1025 | 93.8 | Minus |
| X | 23542271 | X | 15448379..15448583 | 472..268 | 1025 | 100 | Minus |
| X | 23542271 | X | 15447893..15448024 | 604..473 | 660 | 100 | Minus |
| X | 23542271 | X | 15449704..15449746 | 43..1 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:44:38 has no hits.
FMO04117.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:53 Download gff for
FMO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 138..1094 | 1..955 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:46 Download gff for
FMO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 144..1100 | 1..955 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:09 Download gff for
FMO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scamp-RA | 138..1094 | 1..955 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:09 Download gff for
FMO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15447476..15447830 | 603..955 | 93 | <- | Minus |
| X | 15447895..15448024 | 473..602 | 100 | <- | Minus |
| X | 15448379..15448580 | 271..472 | 100 | <- | Minus |
| X | 15449281..15449508 | 43..270 | 100 | <- | Minus |
| X | 15449705..15449746 | 1..42 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:53 Download gff for
FMO04117.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15341509..15341863 | 603..955 | 93 | <- | Minus |
| arm_X | 15341928..15342057 | 473..602 | 100 | <- | Minus |
| arm_X | 15342412..15342613 | 271..472 | 100 | <- | Minus |
| arm_X | 15343314..15343541 | 43..270 | 100 | <- | Minus |
| arm_X | 15343738..15343779 | 1..42 | 100 | | Minus |
