FMO04120.5prime Sequence
405 bp (405 high quality bases) assembled on 2008-08-22
> FMO04120.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATAGCAATGGA
CGAGCAGCGCGGCGACAAGATCTACGGCGGATGCGAGGGTCCGGACGCCA
TGTACGTGAAGCTGATTTCCTCGGACGGCCACGAATTTGTCGTCAAACGC
GAGCACGCTCTCACCTCCGGCACAATCCGGGCGATGTTGTCCGGACCGGG
TCAGTTTGCCGAGAACGAGGCCAACGAGGTGCATTTCCGGGAGATACCAT
CCCACGTCCTACAAAAGGTCTGCATGTACTTCACCTATAAAGTGCGTTAC
ACCAACAGTTCTACCGAAATACCCGAATTCCCGATCGCTCCGGAGATCGC
ATTAGAACTTTTGATGGCGGCTAATTTCCTAGACTGCGCAAGCTTTCTAG
ACCAT
FMO04120.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| EloC-RB | 654 | CG9291-RB | 148..498 | 37..387 | 1755 | 100 | Plus |
| EloC-RA | 576 | CG9291-RA | 70..420 | 37..387 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19445928..19446139 | 248..37 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 19445241..19445379 | 387..249 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:08 has no hits.
FMO04120.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:57 Download gff for
FMO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 70..425 | 37..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:52 Download gff for
FMO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elongin-C-RA | 60..415 | 37..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:15 Download gff for
FMO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| EloC-RA | 70..425 | 37..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:15 Download gff for
FMO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19445928..19446143 | 27..248 | 97 | -> | Minus |
| 2R | 19445236..19445379 | 249..392 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:57 Download gff for
FMO04120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15332741..15332884 | 249..392 | 98 | <- | Minus |
| arm_2R | 15333433..15333648 | 27..248 | 97 | -> | Minus |
