FMO04121.5prime Sequence
431 bp (431 high quality bases) assembled on 2008-08-22
> FMO04121.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAACGTAGTAAAA
TCTTTGTGTATTTTGGGTCTGGTTCTCGTCAGCTTGATTGCCACCCAAGC
AGCCGATGAGCAGGTGGTAGGCGGTGTCAGCCAGTTGGAGGGAAACAGCA
GGAAGGAGGCTCTGGAACTTCTGGATGCCACTCTCGCACAGTTGGCCACC
GGAGATGGTCCCAGCTACAAGGCAATCAATGTGACCTCTGTGACGGGTCA
GGTCGTAGCTGGAAGTCTTAACACCTACGAGGTGGAACTTGACAATGGAT
CCGACAAAAAGCAGTGCACCGTGAAGATCTGGACTCAGCCATGGCTCAAG
GAGAACGGCACCAACATCAAGATCAAGTGCTCTGGTGACGATGGCGAACT
GGACCGCACCTGGGCAAGCTTTCTAGACCAT
FMO04121.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cys-RA | 484 | CG8050-RA | 35..414 | 34..413 | 1900 | 100 | Plus |
| CG8066-RB | 703 | CG8066-RB | 81..374 | 117..413 | 860 | 87 | Plus |
| CG8066-RA | 1173 | CG8066-RA | 81..374 | 117..413 | 860 | 87 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14569173..14569365 | 413..221 | 965 | 100 | Minus |
| 3R | 32079331 | 3R | 14569423..14569610 | 221..34 | 940 | 100 | Minus |
| 3R | 32079331 | 3R | 14568410..14568599 | 413..221 | 525 | 86 | Minus |
| 3R | 32079331 | 3R | 14568663..14568767 | 221..117 | 315 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:24 has no hits.
FMO04121.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:01 Download gff for
FMO04121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cys-RA | 31..423 | 29..421 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:54 Download gff for
FMO04121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cys-RA | 28..420 | 29..421 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:42 Download gff for
FMO04121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cys-RA | 31..423 | 29..421 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:42 Download gff for
FMO04121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14569164..14569365 | 221..421 | 98 | <- | Minus |
| 3R | 14569424..14569614 | 29..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:01 Download gff for
FMO04121.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10394886..10395087 | 221..421 | 98 | <- | Minus |
| arm_3R | 10395146..10395336 | 29..220 | 98 | | Minus |
