FMO04122.5prime Sequence
896 bp (896 high quality bases) assembled on 2008-08-22
> FMO04122.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATGCGATCG
AAAGTCTTGAGCTTGGTGGCCCGTGCTGGCTCCAACCGTATGATGTCCAC
TGCCACCAAGTTGACCACAGTGGAGGTCAACGACAAGACCGGCATCGCCA
CCCTCACGATGAACCGGCCACCCGTAAATGGTCTTAACTTGGAACTGCTG
CAGGACCTGAAGAGCTCCATTGATGAAATCGAGAGCAATAAGAGTCGCGG
ACTCATTTTGACTTCGTCTAGCTCCACAATATTCTCAGCTGGTTTGGATA
TTCTGGAGATGTACAAGCCGGATAAGGACAGGATTCGCGCCTTCTGGACG
CAACTGCAGGATACTTGGCTGGCCCTTTACGGCAGCAGTGTTCCCACAGC
GGCAGCCATCAATGGACACTCCCCTGCCGGTGGATGCTTGCTAGCCACAT
CCTGCGAGTATCGGGTCATGGTGCCAAACTTTACCATCGGCCTGAACGAA
ACACAGCTGGGTATTGTGGCGCCCCAGTGGTTTATGGCCTCTTTCCTGAG
CGTCTTGCCACAGCGAATTGCGGAACGCGCCCTCAACCAGGGTCGCATGT
TCACCACGGAGGAGGCCCTGAAGGTGGGCCTCATCGATGAGACTGCCAAT
AACAAAGAGGAGGCTATTGAAAGTGTGTCGCCTTCATTGGCACCTTTGCC
AAGGTCAATCCGCTAGCCAGGTCACTGACCAAGCAGCAATTCCGAGCTGC
TGATCTACAGCAACTGCAGAACGGACGGAAAGGAGGATCTGGAGAAATTC
CTGTTCTTTGTCAACCAGCCGGCGGTACAGAAGGTCTGGGCATTTATCTC
GAGGGTCTGAAGAGAAGGCCAGAAGCAAGCAAGCTTTCTAGACCAT
FMO04122.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4598-RB | 1216 | CG4598-RB | 97..939 | 39..878 | 4095 | 99.4 | Plus |
| CG4598-RA | 997 | CG4598-RA | 97..939 | 39..878 | 4095 | 99.4 | Plus |
| CG4594-RB | 1103 | CG4594-RB | 177..829 | 93..744 | 585 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9919376..9919826 | 414..863 | 2110 | 99.3 | Plus |
| 2L | 23513712 | 2L | 9918881..9919108 | 39..266 | 1140 | 100 | Plus |
| 2L | 23513712 | 2L | 9919169..9919317 | 266..414 | 745 | 100 | Plus |
| 2L | 23513712 | 2L | 9920428..9920594 | 93..259 | 325 | 79.6 | Plus |
| 2L | 23513712 | 2L | 9920857..9921185 | 417..744 | 230 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:40 has no hits.
FMO04122.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:47 Download gff for
FMO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4598-RA | 87..939 | 29..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:35 Download gff for
FMO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4598-RA | 70..922 | 29..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:18 Download gff for
FMO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4598-RA | 87..939 | 29..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:18 Download gff for
FMO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9918871..9919108 | 30..266 | 98 | -> | Plus |
| 2L | 9919170..9919316 | 267..413 | 100 | -> | Plus |
| 2L | 9919376..9919843 | 414..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:47 Download gff for
FMO04122.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9918871..9919108 | 30..266 | 98 | -> | Plus |
| arm_2L | 9919170..9919316 | 267..413 | 100 | -> | Plus |
| arm_2L | 9919376..9919843 | 414..882 | 98 | | Plus |
