FMO04127.5prime Sequence
1131 bp (1040 high quality bases) assembled on 2008-08-22
> FMO04127.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCCGCCGGACT
GTCCAATTCAGCAGTGCATATCTATAATTTGGATTCGGGCGCCGGGAAAC
TGGAGAACTTTAGCTATCTGCCGCCCACAGATTCGCCGCAGAGCGTAAGC
ATCTGTGGCGTTCGTTTCCTCGACGAAGGACCACACAACATCCTGGTCGG
CACCACCGATGGCTACGTGCGCCTCTACGATCTGCGGCTAAGAGGCGAAC
AGGCGCGGTTCAAGTACACGCAGCACCCTAATGTGCCTCCGGTGCCCAAA
TCGCTTTCGTGCTTCGACAGAAACGCCAACGGTCGGATTATTTGCTGCGG
CACCGAACAGTTTCACAGCAACGCGTTCCTCGTGTTCTTCGATGTTCGGG
AGCGCCAGCAAATGGGCGTCTACTTCGAAAGCCATGAGGACGATATCACC
TCGTTGCGGTTCCATGCCCAGAATCCAGACCTTCTGGCCACGGGCAGTGT
GGACGGGCTAGTAAACGTGTTCGATGTGAAGGAGCCGGACGAGGATGAAG
CACTGCTTAACACCTTCAACACGGAGAGCAGTGTGGCCCGGTTGGCGTGG
CACAGAAACGTCTACGACAAGGACATCATATCCTGCGTCACGACCACTGG
CGATTTCAAGAGCTACGAGTGCGAGGAGGGCGACGAGGTGGCATCCTTCG
AGCGGCCGGATGTTACGGCGGCATAAGAGAAAAAAAGCCGCAAACTTCAA
CCTGATAAATGCCCACAATCAGGAAGACGGAGGAGTCTTTCTGTTGGCGG
GCACCAACTTCAACAAGGGCGAGATCCTGCGCTCCGTTAGCGTTACCTCG
AAGAACAGCCTCCAGCCATTGGCCAATTTCCAGGGAAACAAGCAGATCGT
CAGAGATAGTCTTTTCGATTCAAAGAGAAGTTTACTTTTTACAAGCGGAG
AATCAGGCATTGTTACGTTTGGCACAGGACGCAAGTGCACGGCGTTCAGC
ATGAAAACTGACGCCAGATGAGAAGAATTCACGCAGCAAGCGCATATGCA
GCTTTCTAGACCATTCGTTTGGCCGGCGGGACCAGGTATTGTTCTTAATT
ATATACATCATTCATAATCCTTATTCAACTT
FMO04127.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12134-RB | 1581 | CG12134-RB | 517..1534 | 37..1043 | 4735 | 98.3 | Plus |
| CG12134-RA | 1526 | CG12134-RA | 462..1479 | 37..1043 | 4735 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9971659..9972443 | 37..819 | 3830 | 99.5 | Plus |
| 2R | 25286936 | 2R | 9972500..9972685 | 819..1001 | 755 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:03 has no hits.
FMO04127.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:10 Download gff for
FMO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RA | 456..1450 | 28..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:07 Download gff for
FMO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RB | 317..1311 | 28..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:39 Download gff for
FMO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RA | 456..1450 | 28..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:39 Download gff for
FMO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9971653..9972443 | 28..819 | 99 | -> | Plus |
| 2R | 9972501..9972704 | 820..1017 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:10 Download gff for
FMO04127.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5859158..5859948 | 28..819 | 99 | -> | Plus |
| arm_2R | 5860006..5860209 | 820..1017 | 95 | | Plus |
