FMO04128.5prime Sequence
1218 bp (1029 high quality bases) assembled on 2008-08-22
> FMO04128.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGACTGCGAGCAAG
GAAGGTCAAGAATCCAGGCGAACCCTCAGCGACAGTTCCGCAGAGGACGT
CAGGAATACAGGATCGAGGACCAGGACCAACGACGACGAAATGTGGCGCA
ATGAACTTGCTATGAACACGGACAGCAGCTCCGTTCAGCCAGAAAAGCGA
GAGGAACGAAGCCACAGAACAGGAAACTCTAATGCGAAGCTCAGCGATGC
CGTAGATGTTGTTCTTCGCGTTCTCCTCGTCATTACCTTCTTCAAGTTGG
AGACGATGACAGCATTCAAACGGGAAATCCACGAGGAAGAGCTGTGGCTA
TACAAGAACCCAAGGCGACCGGACATTGTCAGGGGCGGGGAGCTGCTCTT
CTGGGTGATAGTGGCTCCCTTTCTGGTCACTATCGCCTTCTACTGGTACA
CAAGAGACAGGCGGGACTTTAGAGCCGCCAGCTGGGCCTGGACACTGGCC
CTGTGCATGAACGGCATCCCAACGAGCGTACTAAAGATAACAGTGGGGCG
GCCCAGGCCCGACTATTTTTACCGCTGCTTTCCCGATGGCGTGATGGTGC
TTAACACAACGTCAAATGGCGTGGACACCTCCATCCTGGATTTCAATTGC
ACAGGGCTTCCGGGCGACATAAACGAAGGCCGCAAGAGCTTCCCCAGCGG
ACACTCGTCGTTCGCCTTTGCGAGTTTCGGTTTCATTGCCTATTACATTG
GCGCCAAGCTGCACGCCTTTGATAGCCGGGGACGCGGCCACACCTGGCGG
CTCTGCATCGCTGTGATACCTCTGTTTATCGCACTGCTGGTTGCAGTTAG
TCGCACCTGCGACTACCACCACCACTGGCAGGATGTGACCATCGGCGGGC
TGATTGGCCTGTTTGCAGCTATATAAGCTACACACATACTATCCCTCATC
TTCTGCCTGATGCCGCATACCACTGGTCAGTGACCAGCAGAGAGGAGCAG
TACAGCGACTGCTGAAGACGACATGCAGTCTGTCCCACATCTCGATGGTG
GGATGCGGTGCGAACTCTGCTCGCTGACAAGGAGATCCAATGTACGCAGC
TTCTAGAACATCGTGGCCGCGGCCAGTATGCTAATCTATCTATCTACTAT
CCAATGCCTAGTATCTGCTAGACATGCCTGAATCAAATAAGCCGGGGCAA
CGGAGCGTTCGAACAATC
FMO04128.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12746-RE | 1509 | CG12746-RE | 339..1416 | 32..1084 | 4760 | 97.4 | Plus |
| CG12746-RD | 1381 | CG12746-RD | 211..1288 | 32..1084 | 4760 | 97.4 | Plus |
| CG12746-RB | 1339 | CG12746-RB | 169..1246 | 32..1084 | 4760 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5566467..5566885 | 293..711 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 5566138..5566398 | 32..292 | 1290 | 99.6 | Plus |
| 3R | 32079331 | 3R | 5566945..5567218 | 712..980 | 1120 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:50 has no hits.
FMO04128.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:12 Download gff for
FMO04128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12746-RB | 169..1261 | 32..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:09 Download gff for
FMO04128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12746-RE | 339..1431 | 32..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:26 Download gff for
FMO04128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12746-RB | 169..1261 | 32..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:26 Download gff for
FMO04128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5566135..5566398 | 31..292 | 98 | -> | Plus |
| 3R | 5566467..5566885 | 293..711 | 100 | -> | Plus |
| 3R | 5566945..5567357 | 712..1095 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:12 Download gff for
FMO04128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1391857..1392120 | 31..292 | 98 | -> | Plus |
| arm_3R | 1392189..1392607 | 293..711 | 100 | -> | Plus |
| arm_3R | 1392667..1393079 | 712..1095 | 92 | | Plus |
