FMO04129.5prime Sequence
565 bp (565 high quality bases) assembled on 2008-08-22
> FMO04129.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGAAATGAAA
CATCACTGCCCATGGAAATGTGTTCCAATTTCGACGCCGACGAGATCCGG
CGGCTGGGCAAACGTTTCCGGAAACTGGACCTGGACAATTCGGGCGCGCT
GAGCGTGGACGAGTTCATGTCGCTGCCGGAGCTGCAACAGAATCCGCTGG
TGCAGCGCGTGATCGACATTTTCGACGCGGACGGCAACGGCGAGGTGGAC
TTCAAGGAGTTCATCCAGGGCGTGTCGCAGTTCAGCGTCAAGGGCGACAA
GCTGTCCAAGTTGCGCTTCGCCTTTCGCATCTATGACATGGACAACGATG
GTTACATTTCCAATGGCGAACTGTTTCAGGTTTTAAAGATGATGGTAGGC
AATAATCTGAAGGACACGCAACTGCAGCAGATTGTGGACAAGACGATCGG
ATTCGCGGATAAGGATGAGGATGGCAAGATCTCGTTCGATGAGTTCTGCT
CTGTGGTCGGCAACACGGACATTCACAAGAAGATGGTAGTCGATGTCGCA
AGCTTTCTAGACCAT
FMO04129.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanB2-RB | 2061 | CG11217-RB | 257..766 | 38..547 | 2550 | 100 | Plus |
| CanB2-RA | 1143 | CG11217-RA | 257..766 | 38..547 | 2550 | 100 | Plus |
| CanB-RB | 1148 | CG4209-RB | 103..612 | 37..546 | 1410 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7787234..7787533 | 81..380 | 1500 | 100 | Plus |
| X | 23542271 | X | 5333404..5333913 | 37..546 | 1410 | 85.1 | Plus |
| 2R | 25286936 | 2R | 7787589..7787758 | 378..547 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 7786499..7786539 | 40..80 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:07 has no hits.
FMO04129.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:12 Download gff for
FMO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 38..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:10 Download gff for
FMO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 255..767 | 38..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:40 Download gff for
FMO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 38..551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:40 Download gff for
FMO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7787234..7787532 | 81..379 | 100 | -> | Plus |
| 2R | 7787591..7787761 | 380..551 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:12 Download gff for
FMO04129.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3674739..3675037 | 81..379 | 100 | -> | Plus |
| arm_2R | 3675096..3675266 | 380..551 | 98 | | Plus |
