FMO04131.5prime Sequence
997 bp (997 high quality bases) assembled on 2008-08-22
> FMO04131.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCTTTCTTGTTC
TCTCAACACTGCTTCTGGCCTCTTTGGCACTTGGCCAGGCTCAACAGCAC
GGTGGACTGGCCGTCGATGCCTACTGGCGCACAACCAATATCGAGGCCTG
GCCACCAGGAGCACCCGTCGCAGAGAAGTCCGGAAAACTCATTGCAGGAT
CTGCTCCGGCCCAGGACCTCACGCCCTATGGAGCCTATCAACCCGTGCTG
TTCAGTGCCCCATACTACGCCGCCTACAATCTGCCCCTGGCCTATGTGGT
GCAACCCACCATCGCCAGTGCCGATCAAGCCACCATAGCCAGTGCAACAA
CCACAACGACCACTACCACAACTGGCCGACCCGAAAGCTTAGCTGATGAC
AGCTCCAGCGAGTTGGAGAAACCAGAAAAGCTACAGGCTCTGCCTGCAGT
GAAGACCCGAACCACTGGGGATCTGAAGAGTGATGTGGGTCTCCGCTCAG
CGGTCAGCAAAATAAACCCCGAGTATGTGATCGAAGAGATCGTTCCGGTG
CCGGGCAAGCTAGTGATCTCCACTTCTGGGTCACCCCGCTCCGCCAAGCA
GCAGTTGAAGAAGGCGATTGCCCCACAAAAAATGAGAAAGCAGGCGGGTG
GAAGAGTTCCCTTGAAGGTTGAGGCCACCGGAAAGACCAGCACGAGTTCC
GGCAACTTTCCGCAGATCCCATTTGGAAACTACTTTCCTGCCCTATAGAC
CGGAGCAGGCTCAGGCGATCCAGGGACGCAAGCAGCTGCACTCATCCTGA
AACCTCATTCCAAAGCGGTGGTTGGTAATGGTGGCACTGCCATATCCACG
CCCATTTCCAAGGCGTATCTGAAGAAGGGTGTACCCACCAACGTTTACTT
CATTCCGGAATCTGTGGCCATAGCAGTGGTGGGGTGGCAAAGCGCATGCT
ACGGCGATTTGGAATTGGATCTGTTCACGGCAAGCTTTCTAGACCAT
FMO04131.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11905-RH | 1480 | CG11905-RH | 270..1214 | 35..979 | 4560 | 99 | Plus |
| CG11905-RE | 1539 | CG11905-RE | 329..1273 | 35..979 | 4560 | 99 | Plus |
| CG11905-RC | 1357 | CG11905-RC | 147..1091 | 35..979 | 4560 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16930120..16930981 | 979..118 | 4045 | 99 | Minus |
| 3L | 28110227 | 3L | 16933293..16933360 | 117..50 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:19:47 has no hits.
FMO04131.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:09 Download gff for
FMO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RC | 141..1096 | 29..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:14 Download gff for
FMO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RH | 260..1215 | 29..984 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:53 Download gff for
FMO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11905-RC | 141..1096 | 29..984 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:53 Download gff for
FMO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16930115..16930981 | 118..984 | 98 | <- | Minus |
| 3L | 16933293..16933360 | 50..117 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:09 Download gff for
FMO04131.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16923215..16924081 | 118..984 | 98 | <- | Minus |
| arm_3L | 16926393..16926460 | 50..117 | 100 | <- | Minus |
