FMO04133.5prime Sequence
413 bp (413 high quality bases) assembled on 2008-08-22
> FMO04133.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATATGAACTAC
CAGTACAAGAAGGACCACTCGTTCGACAAGCGCCGCAACGAAGGCGACAA
GATCCGGCGCAAGTATCCGGACCGTGTGCCCGTCATCGTGGAAAAGGCGC
CGAAGACGCGTTACGCGGAGCTGGACAAGAAGAAGTACCTGGTGCCGGCG
GACCTGACAGTGGGCCAGTTCTACTTTCTCATCCGCAAGCGTATCAATCT
GCGTCCCGACGACGCCCTCTTCTTCTTCGTAAACAATGTGATCCCACCGA
CATCGGCCACCATGGGTGCACTGTACCAGGAGCACTTCGACAAGGACTAC
TTCCTCTACATTTCCTATACCGATGAGAACGTCTATGGACGGCAGGCAAG
CTTTCTAGACCAT
FMO04133.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8b-RB | 654 | CG12334-RB | 154..513 | 36..395 | 1800 | 100 | Plus |
| Atg8b-RA | 609 | CG12334-RA | 135..494 | 36..395 | 1800 | 100 | Plus |
| Atg8a-RA | 1214 | CG32672-RA | 269..606 | 42..379 | 775 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17724551..17724910 | 395..36 | 1800 | 100 | Minus |
| X | 23542271 | X | 10765604..10765802 | 330..132 | 470 | 82.4 | Minus |
| X | 23542271 | X | 10767979..10768070 | 133..42 | 235 | 83.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:11 has no hits.
FMO04133.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:14 Download gff for
FMO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8b-RA | 126..494 | 27..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:16 Download gff for
FMO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8b-RA | 126..494 | 27..395 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:42 Download gff for
FMO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8b-RA | 126..494 | 27..395 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:42 Download gff for
FMO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17724551..17724919 | 27..395 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:14 Download gff for
FMO04133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13550273..13550641 | 27..395 | 98 | | Minus |
