FMO04134.5prime Sequence
1254 bp (1080 high quality bases) assembled on 2008-08-22
> FMO04134.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGAGCTAA
TGAGGCAGAACGGACAGAAATGCGAGAGGCAGGAACTCACCTGCAGCGTT
TTATTTACCAATCCCAAGCTTAGTGCCGAGAAGTTATCCTCCAATGATGA
AATAAACTCCATTGCGAGATTCGTATCGAAGGCGGAGGATCTCGAAATGC
ATAGAGTGTTCAGTAAGATATCAAAGAATGGTGTCGAGGAGACCACGTCT
CTGAATCGCTCCCTCTTCGAGTTCGGTCATAATTTCGAGGATGCCGATGG
CTGGCTGAAACTGGAGCAGCCTTGCAAGGATCGGCTGGCCACGGTGCTGC
GCTACATGTTCGAGTCCCATCTGAAGACCACTGTGCAGATAGAAATCAAC
AATATGTACTTCAATTGCCACTTCATCGTGCTGCAGGTGTACTCTCGCTT
CTTTAGTGAACTGGAGATGATTCCGCTGCTGGTCACCCTGCCCGAGAAGA
TCGTGTCCCAGAAGGCCTTTATGCTCTCCTACAAATGGATGCTGAGCGAT
GAGCCCGTCCTGGAGCTGGCTCACATTGTGGAGGTCTATGTGGCCGCCAC
TTATTTGAGGATCTCTGGTCTGGCGGCGCATTGTTGGAAATATTTCGATG
ATGAGGAATACTACAACGAGGATACGGCATGTGTCCTATACGTCGAGTCG
AAGGACAATCCCGCCATGGATGTAGTTCGCAATTTGATGCTGACTATGAT
CCGCAAGTTTCTGCTCACCTTTGTGGCCACCAGGGATTTCCTCGATCTGC
CGACCTCCCATCTGATTTTTTTGCTCGAATCCGATCAAATCTGTGTGAAC
ACCGAGATTGAGGTTTTCTTTATAGCTGTTCGATGGCTGGGTCACGATTG
GAACAAGAGGAAAGTGCACGTACGTCGTTTATGTCCTGTATTCGATTCAC
CTGATGCCATTGTGTATCTACTATATGCGCGACGGGAGGAGATCACCCGT
TGGTGATGAGCTGATTTCACCCGGAGTGCAGTACAGATCGACGAATCCAA
TCGAGAATACGTCCCGCATGTACGAGGATGCTTGAGCATGACCCACAGAA
TGAGAATACGCAGTGATTCGACCGCGAACTGATTGCATAGCCTGGCCACT
ATATACGGCTCGTGTCAATACCGGGAATCGTTCAGCTTCGAATTACCTTC
GGAATTCACAGTCTCAGATCACTGCTTCCAGGGTAATTCTCGCGACCGGG
ATAT
FMO04134.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-RA | 1584 | CG12857-RA | 42..1146 | 33..1119 | 4995 | 97.8 | Plus |
| CG12857-RB | 1571 | CG12857-RB | 42..1133 | 33..1119 | 4790 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14758673..14759425 | 864..112 | 3750 | 99.9 | Minus |
| 2R | 25286936 | 2R | 14758390..14758621 | 1081..861 | 600 | 94 | Minus |
| 2R | 25286936 | 2R | 14759483..14759561 | 111..33 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:21:26 has no hits.
FMO04134.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:36 Download gff for
FMO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 39..1105 | 28..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:57 Download gff for
FMO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 31..1097 | 28..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:44 Download gff for
FMO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 39..1105 | 28..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:44 Download gff for
FMO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14758386..14758619 | 863..1084 | 94 | <- | Minus |
| 2R | 14758675..14759425 | 112..862 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:36 Download gff for
FMO04134.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10645891..10646124 | 863..1084 | 94 | <- | Minus |
| arm_2R | 10646180..10646930 | 112..862 | 99 | <- | Minus |
