FMO04135.5prime Sequence
1275 bp (1059 high quality bases) assembled on 2008-08-22
> FMO04135.5prime
AGCATACCTTATACGAAGTTATCAGTCGACATGTTGCTCCAATTGAGGCG
ATTGGCGATCCTGTTCCTGCTCCACGCTCTCATCCCCATCCTTGCGCTAT
CTGTTCCCATGGTGGAGCAAGTGCAGCCGGCGGACGAGCTGCTATCGTCG
CATTGGCTAAGACAGGCGCAGTCTCAGTTGCGCGAACGTCTGGCCAGAAC
CAAGGACTCCATCGCCGACGTCCGACAGGCCAAGAATGTGGTGATGCTCC
TGGGCGATGGACTGTCCATCACCACCTTAACGGCCGCTCGCATCCTAAAG
GGGCAACGTCGCGGCGGACGCGGAGAGGATGCACAGCTGGCCGTGGAACA
ATTCCCCTTCAGCGGACTGAGCAAGACATACTGCATCGACGAGCAGACAC
CGGACTCCGCCTGCACGGCCACCGCCTATTTCGGCGGTGTGAAGACGCAC
AGCGGCACAGTGGGTCAGAGTGGCAGTGGTGAGCGCGTGGACTCCGTACT
CCAGTGGGCACAGCGAGCGGGCAAGGCCACGGGAGTGGTGACCACCACCC
GTTTGACGGACGCCAGTCCGGCTGGTGCCTACGCCCATGTGAGCAGGCGT
GGCGAGGAGCTGGAGATTGCGCGACAGCTGGTGGAGGAGGAGCCGGGACG
GAATCTTAATGTCATCCTGGGCGGTGGTCTGGGAAAATTTTGCCGATGAG
CGACGGGATGGCAAGGATCTGCTGGCTCAGTGGCGTGAATCGAATCCCAA
TGGCTGCTTCTCGCGATCCCTGAAAGAGCTGAGGAACTGCACCGATGCTA
CCGGTACACTGCTGGGTATCTTCAGCGACAGCCACATGTCATATCACTTG
GCCGCCAGCAAGGAGCTGCCGCGACTCTGCGACATGGCAGCGGCGGCCAT
TGAAAAACTGGAAAGAAAGTCTCAGGAGGATGGGAATGGTTACTTCGTGT
TATTGAGGGCGGACGGATTGATCATGGACACTACGAACCCGGGTGGGTCT
ACTCCCTCATGAAATGGTCGAGTTCGATGCGGCTGTGAGACGGTGATCAA
TGACCGATCCGCGCGATACTCTGTTATTGGTCACCCGTCGATCATTCCTC
ATCGTTAACCATGTCGGGATACGCGGTAGTGGGGACACCCCAATCTGGTC
ATAGATGTACATACTGCTGGATGGTGAACGGGGGGGCATATCGCCACTCT
CACTAGGCTATCGCAAGTGCGGAGCTCTGAAGCAAGAAGATAGCACCTCG
TGGAGGAGTCTCCCACGCCGACGAG
FMO04135.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8105-RA | 1569 | CG8105-RA | 50..1246 | 24..1219 | 5090 | 95.9 | Plus |
| CG3292-RA | 1713 | CG3292-RA | 443..537 | 352..446 | 190 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15587782..15588886 | 24..1125 | 4860 | 97.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:41 has no hits.
FMO04135.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:41 Download gff for
FMO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 50..1169 | 24..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:16:59 Download gff for
FMO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 50..1169 | 24..1140 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:51 Download gff for
FMO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8105-RA | 50..1169 | 24..1140 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:51 Download gff for
FMO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15587782..15588914 | 24..1154 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:41 Download gff for
FMO04135.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15481815..15482947 | 24..1154 | 97 | -> | Plus |
