FMO04136.5prime Sequence
1230 bp (1018 high quality bases) assembled on 2008-08-22
> FMO04136.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGAGAGTCCATG
TGGACAACTACACACCGAAGTACTATAGTGGCAAGTGGTCCTGGAGCGCC
GAAAAGGATTGCCTGGAATTCGAGCCGCACAACGATCTGGAGAATGCCAG
GGAGCGCTACATCACCACCAATGGCTATAAGTTCCTGCGCATCATCGACC
AGGAGGAGGAGCTTATCTTCCGGCAGGCTTACGTGCGGGATACGGGCACC
TATGACTTTGACACCTTGGTGATCAACGACATCCGTGACCTGGTCCTCTT
CCTGATGCCCAGCGATTTTCTGACCTACCGGTTCGTGGAGTTCATGCACC
GCCCGGCGGTTCACCGTCTGATCCATGCGCTCATCATTTATTTCGAATAC
TTTCTGCGTATGGTGGAGTTTGTGCTGGTGCGGCGCGACGAATTGGCCGA
TCAGATCCAGAGCGATCAGACCATCGATATGAAGAAGACATTCTCGATCT
ATCTCAGTCAGTATCGCCTCCTGGTGGCCCGCAACTACAGTGTGATTCTG
AAGGGAGAGGGCGATATGGCCAAATACTACCATATGAAGGAGATTATCAA
TATTTCGGATACCAGTCGCGACCGCGTCTTCCACGAGCAGTTTCTGGCCG
TGATGACCCAGATTGTTTGGATCTGCATGCATCGCCGTGCGTACAATGTC
ATTGAGATGGAAATGAACCGTCTGTTTCGTTCCGATCACTTTGTTATGGC
ACGTCCGGAGTATCTGAGCTTTACGCCGGCGGAGCGCAGTTTACTGTACG
GTCGGAACCATAAAATCGTTAACTATCGCACCCAGATATCGCCGCTCGTC
CAGGAAGTTGGAGCACGTGGCGGAGGAGGACATGCCCATCCTGTGGATTG
GCGAGCGAAAGTACCGAGGCAACGACAAGCCGCATTGCCGAGATGGAGCT
GGAGTACATTGTGCCGGGACCACCAGCTGCGTATGATCGATGTGGCACAC
GGCATACTGGGACATCCGAAGATCCTTACAACACCATCCTAGACCTGGGA
CTGCCCACAGTTCCGCTACTCAAACTTTCGCTTGGCCTACGATCCGTACC
ACATCATCGCCCAGCCGCCTTGACATTCCCAAGACTGACGCCTTGAAGCC
CGCAAGATGATGAAACCTACCAGCATTTCCTCAGGTGATCCGACTTCACA
ACCGCCACGCGTGCCAATACTCTGTCCAGA
FMO04136.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14689-RA | 1661 | CG14689-RA | 109..1255 | 34..1179 | 5290 | 98.1 | Plus |
| CG31391-RA | 1704 | CG31391-RA | 87..1133 | 35..1078 | 770 | 73 | Plus |
| CG31467-RA | 1694 | CG31467-RA | 552..1133 | 451..1034 | 440 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10709994..10711140 | 1179..34 | 5010 | 97.3 | Minus |
| 3R | 32079331 | 3R | 10704797..10704989 | 227..35 | 470 | 82.9 | Minus |
| 3R | 32079331 | 3R | 10706542..10706722 | 227..47 | 395 | 81.2 | Minus |
| 3R | 32079331 | 3R | 10704106..10704560 | 913..458 | 370 | 72.6 | Minus |
| 3R | 32079331 | 3R | 10705800..10706312 | 965..451 | 345 | 72 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:25 has no hits.
FMO04136.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:08 Download gff for
FMO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14689-RA | 106..1264 | 28..1187 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:02 Download gff for
FMO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14689-RA | 106..1264 | 28..1187 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:32 Download gff for
FMO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14689-RA | 106..1264 | 28..1187 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:32 Download gff for
FMO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10709985..10711143 | 28..1187 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:08 Download gff for
FMO04136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6535707..6536865 | 28..1187 | 97 | | Minus |
