FMO04138.5prime Sequence
771 bp (771 high quality bases) assembled on 2008-08-22
> FMO04138.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGTCTGC
TAAAGTCCTAAATAAACTATTGAAGGAAGCTCCCAAAGATTCAAAAGGAA
GCAAAGAGATTGAAGAGTTACGAAACCTGATCATAGAGCTGATGAAACCA
CGACTGGGACAACTACTTCAGATACTAAAGACTCGCATGATAGCTTCCAC
TCGAGATGAGTTTCAAGATGAAAATGAAGACTGGTGGCCAGATTATGAGC
TATTATCAGCAGACTGGAGAGCCTTCACAGATATGAATGGTCTTTTAGTC
TGCACTCAGAATGCTTTAAAGGGACTACCGGGTGATCTTAAGGCCATTGG
TGAAAAGTTCGATTATGCCTATTCCGTTGCAAAGCCTATAACTGCTCGAA
ATAAGACCAAAAACTATTTTTTAGTAGTGGAACTTATAGAGGACATGGAG
GACTTTGTAACGCACCTCAGCCGCCTGTGTAGCAAGAATCTGGACGAGCG
AAGGGACCTATACGATCTGGCTTCGATAACTAAAGATACTGGCGATAGAA
TCAAGGTGAAAGTCTTCGATGAACGCATCTTTGTGCAATTGCAGTCGCGA
ATTGCAAGTCTTAGGAACTACATAAGGGACTTCTGTGCCCTTTTCGATGC
CCACTTGGAGTCCGAAGAGGAGGATGAATTCGAAACATTAGATATGTTGG
CAAAACCCCAAGGACCACTTGCCACGGGAACCAATGCTGATAAGGCCCGG
ACTGCAAGCTTTCTAGACCAT
FMO04138.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 46..760 | 39..753 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7025967..7026431 | 753..289 | 2325 | 100 | Minus |
| 3L | 28110227 | 3L | 7026499..7026749 | 289..39 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:32 has no hits.
FMO04138.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:22 Download gff for
FMO04138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 41..765 | 35..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:25 Download gff for
FMO04138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 28..752 | 35..759 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:18 Download gff for
FMO04138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 41..765 | 35..759 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:18 Download gff for
FMO04138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7025962..7026431 | 289..759 | 99 | <- | Minus |
| 3L | 7026500..7026749 | 39..288 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:22 Download gff for
FMO04138.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019062..7019531 | 289..759 | 99 | <- | Minus |
| arm_3L | 7019600..7019849 | 39..288 | 99 | -> | Minus |
