FMO04141.5prime Sequence
1270 bp (973 high quality bases) assembled on 2008-08-22
> FMO04141.5prime
TTATCAGTCGACATGGCCTGTAACGCTAGCAAGACGTCGCTCCTGCGCGC
CATCGCCAAACGAGGCTACGCCACCTGCCCGCGTCCCGTCGGCGACCTGT
CCGCCGTGAACGTCAAGGTGCTGGAGAACAAACTGGTGGTAGCCACCGCC
GATGCAACTCTTCCCGTTTCGCGCGTCTCTTTGGTGCTGGGAGCCGGATC
ACGAAACGAGTCCTACGACATCCAGGGAGCCTCGCACCTGCTTCGTTTGG
CCGGAGGACTGAGCACCCAGAACTCGACCGCCTTCGCCATCGCCCGCAAC
ATCCAGCAGGTGGGCGGTACCCTGACCACATGGGGCGATCGCGAGCTCGT
CGGCTACACGGTGACCACCACAGCAGACAACGCCGAGACTGGACTGCGCT
ATCTGCAGGACCTGCTCCAGCCAGCCTTCAAGCCCTGGGAGTTGGTCGAC
AATGCCAAAACGGTGGTCAACCAACTGAACGCCGTCTCCACGGAGGAACG
CGCCATTGAGCTCGTTCACAAGGCCGCCTTCCGCAACGGCCTGGGCAACT
CGATCTACTCGCCCCGCTTCCAGTTGGGCAAGCTGTCCTCCGAGAGCCTG
CTGCACTACGTGGCCCAGACCTTCGCAGCTGGCCGTGCCGCTGTCGTGGG
CGTGGGAATCGACAACCACACGCTGGCCGGCTTCGCCCAGACCCTGCAGT
TCCCCAGCGGCGGCAGCAAGGCTGCCTCCGCCAACTGGTATGGTGGAGAT
GCGCGCAAGGACACTTCTGGTCACCGTGCGGTCGTCGCCGTTGCTGGACA
GGGCGCCGCCGCATCGAACCACAAGGAAGCGCTGGCATTCGCCATCCTGG
AGCAGGCGCCTCGGCGCCAAGGCCGCCACCAAGCGCGGCACTTCTGCTGG
ACTCTTTGGCGAAGCCGTCAACTGCGCCGGCGGCGTCGGAGCTTCTGTCA
AGGCTGTGAATGCCAGCTACTCGGACGCTTGTTCTGTTCCGTTTTGTGGT
CCTCCGCCGACTCCAAGACAATGGCAAGAACGTGGAGTTTCCTGGTGCCG
GCCCTGAATCCGCTTCGGTACTGATATAGGATGTGACAGAGAAAGGTCTC
TTTTGAAGGACCAACTATCTCGGCTATCTGCGGACAGTATCATTATAGGA
TATCGTCCCAGGCGCCTCTCACCGGAACGCGTCGGAAGGGAACCTCGCTT
GTGCAATCTAAGCTAATCTCAATCCAGGCTAGAAGGGACCAAAAGGGTGG
CGTACCCTCCAGTGTGCTAG
FMO04141.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4169-RB | 1537 | CG4169-RB | 127..1223 | 12..1109 | 5015 | 97.7 | Plus |
| CG4169-RA | 1686 | CG4169-RA | 276..1372 | 12..1109 | 5015 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16585183..16585726 | 494..1039 | 2430 | 98 | Plus |
| 3L | 28110227 | 3L | 16584778..16585083 | 191..496 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 16584589..16584722 | 58..191 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 16584399..16584444 | 12..57 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:48 has no hits.
FMO04141.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:01 Download gff for
FMO04141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4169-RA | 266..1339 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:01 Download gff for
FMO04141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4169-RA | 266..1339 | 1..1076 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:16 Download gff for
FMO04141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4169-RA | 266..1339 | 1..1076 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:16 Download gff for
FMO04141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16584779..16585082 | 192..495 | 100 | -> | Plus |
| 3L | 16584389..16584444 | 1..57 | 91 | -> | Plus |
| 3L | 16584589..16584722 | 58..191 | 100 | -> | Plus |
| 3L | 16585185..16585772 | 496..1085 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:01 Download gff for
FMO04141.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16577489..16577544 | 1..57 | 91 | -> | Plus |
| arm_3L | 16577689..16577822 | 58..191 | 100 | -> | Plus |
| arm_3L | 16577879..16578182 | 192..495 | 100 | -> | Plus |
| arm_3L | 16578285..16578872 | 496..1085 | 96 | -> | Plus |
