FMO04142.5prime Sequence
1219 bp (1027 high quality bases) assembled on 2008-08-22
> FMO04142.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGAGGCTCAA
GTGGATAAACGAATTCGATTGCAGGACTTGCCGGCTGAGGTGCTGCATAT
GGTCATGGGCCATTTGGACCTATATCACCACAAGTTGCTGCGGGAAACTT
CGGAGGAACTGAAGCAAATCAGCACGGCGTACATATTGCATCATCACAAG
GCCTACGAGGTGGCCCATTCGGAAGGAACCTCGGAGAAGGAGCAGAGTAG
CGCGAAAAGGATCATGCTGCAGGTCCTGCGCACGACAATTAGCTACTTTT
CCGACGAAGACAGTGAATCCGACGTAGCCATCAGTCTGCTGCACTTCCAC
TCTAAGGAGGCTGTTTTTTATAACGAAGCTGACCATCTGGGCAAGTTCCT
TGCCCATTTCCTGTTCCTCAATGAGCGAACGTTCAACGTATTCAGTGCTG
AGAGACTGAAGCTTAAGCGCCTCCATTACACAATGGCAATTTTCGGCCTA
TTGCGACAATTTCGAAATTTTAGAATCCTGGGATTCGGTAAGACCATTTG
GCACTGGAACGTGGAGGTCGAATTGAGCAACACATTCATCGGTGTCATTG
GAGAGGCAAAGGCCAGCTTCAATACTGTGGAGTCCCAACGACGCATCTAC
TTCATTTCCATTCTGGCCGAGCTGCTCTTCCACGAGAAGAGCAATCAGAA
CTATGGTGGACAGAGGGGCTTGGAAAGGCACTTTGTACACCTACAGTATT
CAGCCAAATTCAAAAGCCAAGCGCACTCCTCGAATGTTTATAAAGTTTAT
AGTGGAGGGTCCGCAGTTTCTAATTGATTACCTGAAGGACCTAATTAGCG
GAGACGAGATCCTCACAATTCGTTCGACTTGCCACCAGGAACGGACTTTG
CCATTCGAGTTGAGACAGGTGCTTTAAAGGACCCAAATTTGTATATTTGG
GAAATCTGACTTTATGTGTGAGATGGAGCGACTAGTCGATGCAGCTTTCT
AGACATCGTTTGGCGGGGGGCCCAGGTAGTGTCATATCATATCTAATCAT
AATCTAATCAACCTAGGCTAGGGATCTGTATGACTATGCTTGATTCCCAC
AATAAAAGCCGGCGCACGAACGTCTGGAACAATCGATGGAATCTGAGGTC
TTACGGACTTCCAGACTCAGGCTGCATCCATAGCGCCGCCCAGCTGCGAA
ACTGTGTGTGAATCCCATA
FMO04142.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7707-RA | 1138 | CG7707-RA | 87..1053 | 28..990 | 4630 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17243529..17243767 | 36..274 | 1195 | 100 | Plus |
| 3L | 28110227 | 3L | 17243810..17244047 | 269..506 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 17244372..17244626 | 706..959 | 1115 | 98.4 | Plus |
| 3L | 28110227 | 3L | 17244110..17244309 | 507..706 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:46:37 has no hits.
FMO04142.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:11 Download gff for
FMO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7707-RA | 82..1058 | 23..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:33 Download gff for
FMO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7707-RA | 82..1058 | 23..994 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:39 Download gff for
FMO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7707-RA | 82..1058 | 23..994 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:39 Download gff for
FMO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17243517..17243765 | 23..272 | 98 | -> | Plus |
| 3L | 17243814..17244047 | 273..506 | 100 | -> | Plus |
| 3L | 17244110..17244309 | 507..706 | 100 | -> | Plus |
| 3L | 17244373..17244666 | 707..994 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:11 Download gff for
FMO04142.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17236617..17236865 | 23..272 | 98 | -> | Plus |
| arm_3L | 17236914..17237147 | 273..506 | 100 | -> | Plus |
| arm_3L | 17237210..17237409 | 507..706 | 100 | -> | Plus |
| arm_3L | 17237473..17237766 | 707..994 | 96 | == | Plus |
