FMO04143.5prime Sequence
1241 bp (1066 high quality bases) assembled on 2008-08-22
> FMO04143.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTTAATATTAT
GCTTGTTAAATTTGTTGTCATCTTTGCCCTGATCCTCGCCAGCTGTCGGG
TGGAGGCGGATAACACCTCGGTGTTGCCGGAGGGCTTTGTGGACGCCGCT
CAGCGCTCTACACACACGAACAACTGGGCGGTGCTGGTGGACGCATCGAG
ATTCTGGTTCAACTACCGGCATGTGGCCAATGTGCTGTCTATCTACCGCT
CGGTAAAGAGACTGGGCATTCCTGACTCCCAGATCATACTGATGATCGCC
GACGACATGGCCTGCAATGCTAGGAACCCACGGCCCGGCCAGGTGTACAA
TAACGCCAACCAGCACATCAATGTGTACGGAGACGATGTAGAGGTGGATT
ACCGCGGCTACGAGGTGACAGTTGAGAACTTTGTGCGTCTGCTAACTGGG
CGCACCCAGAACGGCACGGCGCGCTCGAAGAAGCTGCTCTCGGACGCGGG
CAGCAATGTGCTCATCTACCTAACCGGACACGGCGGCGATGGATTCCTCA
AGTTCCAGGACTCGGAGGAGATAACCAGCCAGGAGTTGGCCGACGGCATC
CAACAGATGTGGGAGAAAAAGCGGTACAATGAGCTATTCTTCATGGTGGA
CACTTGCCAAGCAGCTTCGCTCTATGAGAAGTTCACCTCGCCGAATGTCC
TGGCAGTGGCTAGCAGTCTTGTTGGCGAGGATTCCTTATCGCACCATGTG
GATCCATCGATTGGAGTCTACATGATAGACCGGTACACCTACTACGCCTT
GGAGTTCCTGGAGAAGGTGCAGCCCTTTAGCAAACGGACCATAGCGAATT
TCTGCAAGTGTGCCCCAAGAGAGTGTGCATTTCGACAGTGGGAGTGCGCA
AGGATCTGTACCCCGGGATCCGCACAGGTGCCCATCACAGACTTCTTTGG
AGCCATACGTCCCACACGGGTATCCACCGATCGCATCATGTGACCTGGCA
TGAGATGATTTCATTTTCGACAAAGATAAGATGTGACCAAAAGCCCTTCA
ATCGTGATGGAGTCACAGTTTCCTCGAGGTTTAAGCAAGCTTTCTAGACA
TTCGTTGGCCGCCGGGCCCAGGTAATGGATACTTAATCATATCTAGTCTA
ATCCACACTAGCCCTAGGATTGGCCTGACATGCCTTGAATCTCACAATAA
AAGGCCCGGCGCAACCGAGAGCGTTCTGACACATTCGCGCA
FMO04143.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4406-RA | 1203 | CG4406-RA | 69..1118 | 37..1074 | 4970 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2008708..2009296 | 625..37 | 2945 | 100 | Minus |
| X | 23542271 | X | 2008514..2008632 | 741..623 | 595 | 100 | Minus |
| X | 23542271 | X | 2008151..2008289 | 988..852 | 595 | 98.6 | Minus |
| X | 23542271 | X | 2008359..2008462 | 844..741 | 520 | 100 | Minus |
| X | 23542271 | X | 2007996..2008068 | 1074..1006 | 200 | 94.5 | Minus |
Blast to na_te.dros performed 2014-11-28 19:22:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 1688..1772 | 786..873 | 125 | 66.3 | Plus |
FMO04143.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:53 Download gff for
FMO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 63..1128 | 31..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:35 Download gff for
FMO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 42..1107 | 31..1082 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:08 Download gff for
FMO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4406-RA | 63..1128 | 31..1082 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:08 Download gff for
FMO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2008351..2008461 | 742..851 | 99 | <- | Minus |
| X | 2008514..2008631 | 624..741 | 100 | <- | Minus |
| X | 2007986..2008068 | 1006..1082 | 91 | <- | Minus |
| X | 2008132..2008289 | 852..1005 | 94 | <- | Minus |
| X | 2008710..2009302 | 31..623 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:53 Download gff for
FMO04143.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1902019..1902101 | 1006..1082 | 91 | <- | Minus |
| arm_X | 1902165..1902322 | 852..1005 | 94 | <- | Minus |
| arm_X | 1902384..1902494 | 742..851 | 99 | <- | Minus |
| arm_X | 1902547..1902664 | 624..741 | 100 | <- | Minus |
| arm_X | 1902743..1903335 | 31..623 | 99 | | Minus |
