FMO04146.5prime Sequence
662 bp (662 high quality bases) assembled on 2008-08-22
> FMO04146.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGAGCAAAGTCAGAGGA
CCAGCTTTGTACCGCCTGGTGCCCTCGAAAACGCTCTTCATGCTGTGCGA
CGTGCAGGAGAAGTTCAAGCCGGCCATTCCGCTGCTAAGTTCGCTCATCG
AAAACACTACTAAACTGCTGGCAGCCGGCAAGGTCTTCCAAGTGCCACTG
CTGGTCACCGAGCAGTATCCCGAGAGGCTGGGCAAGACCGTTTGTGAGTT
GGACATCAAGCATGCCTGTGCCAATATTTCCAAGACCATGTTCTCTATGC
TGGTGGAGCCGGTACGTAAGAGTATGACTGATATCTTCGGTGGCAAGCCC
AAGACGGTGGTGCTTTTCGGTCTGGAGACACACGTCTGTGTGGAGCAGAC
GGCCTTCGACCTGGTAAATGATGAAATCGATGTCTGGCTGGTGGCCGACT
GCTGTGCGTCGCGTCACAATCAGGATCGGGACTTGGCCTTGGAGCGCCTG
CGTCACATTGGCTGCAACATAGCAACTTCCGAGAGTGTGATATTTAATCT
GCTGGGGGACAAGAACAACAAGTCCTTCAAGGAGATTACTCCTCTGGTGA
AGAAGATCTCCGCAGACATGCAGCTATGCCGCGTCTCAAAAAATGCAAGC
TTTCTAGACCAT
FMO04146.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11333-RA | 715 | CG11333-RA | 49..661 | 32..644 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31463812..31464080 | 376..644 | 1345 | 100 | Plus |
| 3R | 32079331 | 3R | 31463541..31463751 | 167..377 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 31463349..31463484 | 32..167 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:54:09 has no hits.
FMO04146.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:34 Download gff for
FMO04146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11333-RA | 1..622 | 29..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:17 Download gff for
FMO04146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11333-RA | 1..620 | 29..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:45 Download gff for
FMO04146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11333-RA | 43..666 | 23..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:45 Download gff for
FMO04146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31463542..31463751 | 168..377 | 100 | -> | Plus |
| 3R | 31463814..31464085 | 378..650 | 99 | | Plus |
| 3R | 31463343..31463484 | 23..167 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:34 Download gff for
FMO04146.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27289264..27289473 | 168..377 | 100 | -> | Plus |
| arm_3R | 27289065..27289206 | 23..167 | 97 | -> | Plus |
| arm_3R | 27289536..27289807 | 378..650 | 99 | | Plus |
