FMO04148.5prime Sequence
982 bp (982 high quality bases) assembled on 2008-08-22
> FMO04148.5prime
TTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGACGACACCG
ACTTCTCGCTCTTCGGGCAGAAGAACAAGCACAAGAAGGACAAGGCGGAT
GCCACCAAGATCGCCCATACGCCCACATCGGAGCTGGACCTCAAAAGGAT
CATAATCTCGCGCCCCACCAACGAGGACACATACGAGAATTGCGCGCGAG
CGGGCATTGCGCTAATCCTGAACCACAAGGATGTCAAGGGACAGAAGCAG
CGCGTGGGCACCGAACGGGATCGCGATGACATGGAGGCGACGCTGCAGGG
ATTCGGATTCGATGTACGCACCTTCGACGATCTGACCTTCTCCGAGATCA
ACGACACGCTCAAAGAGGTTGCTCGCGAGGATCACAGTCAAAACGACTGC
TTTGTGTTGGCGGTGATGTCACACGGCACCGAAGGCAAGGTCTACGCTAA
GGACATGTCATATCCTGTGGAGCGCCTTTGGAATCCCTTCCTCGGCGACA
ACTGCAAGACGCTCAAGAACAAACCCAAACTCTTCTTCATCCAGGCCTGT
CGCGGAGCCAACCTGGAAAAGGCAGTCGAGTTCTCCAGCTTCGCTGTGAT
GACCAGGGAACTGGTCCCGGAGCCCGCTGCCGCCGTTCAGCCCATCACCT
ATGCCATTCCCAGCACGGCGGACATCCTCGTCTTCTACTCCACATTCGAC
AAATTCTTCTCATTCCGTAACGTTGACGATGGCTCCTGGTTCATCCAGAG
CTTGTGCCGCGTCCTCGACCAGGCCGCCGCCAACGAAGCTGCCACGCCGG
AGGGCGTCGAGCTACTCCGCCTGCTGACCGCAGTGAATCGGAAGGTGGCC
TACGAGTACCAGTCGAATACGAAGAACGAGGCCCTCAACCAGGATGAAAG
GAATGCCAACTTTATGGTCGACACTGACCAAAACATTCCAGCCTGGCGTG
TTAAGCCCAGACCGCAAGCTTTTCTAGACCAT
FMO04148.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Decay-RA | 1111 | CG14902-RA | 48..966 | 38..959 | 4430 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16499763..16500096 | 701..368 | 1655 | 99.7 | Minus |
| 3R | 32079331 | 3R | 16500673..16501003 | 368..38 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 16499203..16499457 | 959..702 | 1025 | 95 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:09 has no hits.
FMO04148.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:15 Download gff for
FMO04148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| decay-RA | 41..977 | 32..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:21 Download gff for
FMO04148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| decay-RA | 663..1599 | 32..970 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:05 Download gff for
FMO04148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Decay-RA | 41..977 | 32..970 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:05 Download gff for
FMO04148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16499192..16499457 | 702..970 | 95 | <- | Minus |
| 3R | 16499763..16500095 | 369..701 | 99 | <- | Minus |
| 3R | 16500673..16501010 | 32..368 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:15 Download gff for
FMO04148.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12324914..12325179 | 702..970 | 95 | <- | Minus |
| arm_3R | 12325485..12325817 | 369..701 | 99 | <- | Minus |
| arm_3R | 12326395..12326732 | 32..368 | 99 | | Minus |
