FMO04149.5prime Sequence
1079 bp (981 high quality bases) assembled on 2008-08-22
> FMO04149.5prime
AGCATACATTATACGAAGTTATCAGTCGACATGGCGACATCTCCCAGAAG
GAAAAACGATCAAGGCGGAGTAATTGGCGCTAGCTCATCGCAGGACCTCG
TCACTGACCAGAACTCGGGTCGTCGTCAGGAGCAGAAGGTCTACACCTTC
AGTGACCGGCCACCACAACCAAAGCCACCGGCACCATCCGGAGTCGTTCC
GGTAAAGGCCGACGACAAGTCGAAGCCGCAGAAAACCATTCTTGAGGAGC
ATGGCATCATACTCGGTAAGGTTATTGGCACCGGAAACTATGCCAAGGTG
AAGATTGGCTTCTCCGAGGAGTACGGAAAGCGGGTGGCTGTCAAGATCAT
ATCCAAAGTGAAGGCTCCCTCCGAGTACACGCAAAAGTTCCTGCCGCGAG
AGATCGAGGCGGTGAAGGGTCTGCACCACGAAAATCTGATAACTTTTTAT
CAGAGCATCGAGACCAGTCATAGGGTGTACTTGATAATGCAGCTGGCCGA
GAATGGAACGCTTCTGGACTACGTCCGTGAGCGAAAGTTTCTGGACGAGC
CGCAATCACGTACGCTATTCAAGCAGCTGGTGAGTGCCGTGGAGTACATC
CACAGCAAGGGAGTGGTGCATCGGGATATTAAGTGCGAGAATCTGCTGCT
GGATGAGAACTGGAATCTGAAACTGATCGACTTCGGGTTCGCAAGGAAGG
ATACCCGAACCTCCGACAATCAAGTGATACTCTCGAAAACCTTCTGCGGC
AGCTATGCCTACGCCAGTCCAGAGATCCCTCAGGGCGTCGCCTATGATCC
TTTCATGTCGGACATCTGGGCCTGCGGCGTCGTCTGCTATGCGATGGTCT
TTGGACGCCTTCCCTACGATGGCTCCAATGTGCACATCCTGCTCAAGCGC
ATCAATCAATCCCTGGTCTTCCCAAATTCCCCATCAGCTTCCAGCGGGTG
CAAGCACATGATATTGCATATTTCTAGCACCGTTGAGATCAGTACAATAT
TCCGCAGTCAAGGAGACCTGGTTATCGCTAGCAAGCAGCTTCTAGACATC
GTTTGCCGGCGGGTCAGTACTGTCATATC
FMO04149.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9222-RA | 1290 | CG9222-RA | 165..1151 | 31..1015 | 4600 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6131284..6131689 | 69..474 | 2000 | 99.5 | Plus |
| 2L | 23513712 | 2L | 6131746..6132052 | 472..778 | 1490 | 99 | Plus |
| 2L | 23513712 | 2L | 6132112..6132336 | 784..1007 | 875 | 95.6 | Plus |
| 2L | 23513712 | 2L | 6131187..6131226 | 31..70 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:21 has no hits.
FMO04149.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:06 Download gff for
FMO04149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9222-RA | 165..1163 | 31..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:42 Download gff for
FMO04149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9222-RA | 165..1163 | 31..1025 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:30 Download gff for
FMO04149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9222-RA | 165..1163 | 31..1025 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:30 Download gff for
FMO04149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6132113..6132357 | 785..1025 | 93 | | Plus |
| 2L | 6131187..6131226 | 31..70 | 97 | -> | Plus |
| 2L | 6131286..6131688 | 71..473 | 99 | -> | Plus |
| 2L | 6131748..6132058 | 474..784 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:06 Download gff for
FMO04149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6131187..6131226 | 31..70 | 97 | -> | Plus |
| arm_2L | 6131286..6131688 | 71..473 | 99 | -> | Plus |
| arm_2L | 6131748..6132058 | 474..784 | 98 | -> | Plus |
| arm_2L | 6132113..6132357 | 785..1025 | 93 | | Plus |
