FMO04150.5prime Sequence
471 bp (471 high quality bases) assembled on 2008-08-22
> FMO04150.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGCTTCGTCT
TACGACCATTGCTCTTCTACACCGTGCTCCTTTATTAGTTGTGCCAAAGT
TAAAAGCAACACCGCCAACACGCACTCTATTGTTAAGAAAGAATCTGGTA
CCGTTTTTAGATGATGATCCTTGTGTGTTCTCAAAGAAAGCCGTCATGCA
TCATTGGGGGGTCCTTCCGATTCTGTTCATAACACTTGTTGGAGGTATAC
TTAAGGTTGGCGCCATGATCCGCCTGGCATTGGTGAAGGACGATGTGTTC
TTTACCAAGGATTCGGCATACTATATGTACTTGGAGACGCGCAAAGGTCC
CTGGTACAAGCAAAAGAGTCGTAAGTGGGGTGGTCGGGATGAGTATGATA
TGCCACCGGGATTGCTCCTGGCCAACCAGGGCGATGTTTCTGGTCCTTCA
TTCGCAAGCTTTCTAGACCAT
FMO04150.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ymp-RA | 1270 | CG12250-RA | 97..513 | 37..453 | 2040 | 99.3 | Plus |
| ymp-RC | 1247 | CG12250-RC | 97..512 | 37..452 | 2035 | 99.3 | Plus |
| ymp-RD | 1066 | CG12250-RD | 97..511 | 37..451 | 2030 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25592721..25592886 | 375..210 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25592583..25592661 | 451..373 | 365 | 97.5 | Minus |
| 3R | 32079331 | 3R | 25608726..25608798 | 212..140 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 25608969..25609031 | 99..37 | 315 | 100 | Minus |
| 3R | 32079331 | 3R | 25608865..25608906 | 139..98 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:53 has no hits.
FMO04150.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:09:15 Download gff for
FMO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..513 | 37..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:50 Download gff for
FMO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12250-RA | 98..514 | 37..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:28 Download gff for
FMO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..513 | 37..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:28 Download gff for
FMO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25592576..25592658 | 376..461 | 93 | <- | Minus |
| 3R | 25592721..25592885 | 211..375 | 99 | <- | Minus |
| 3R | 25608728..25608798 | 140..210 | 100 | <- | Minus |
| 3R | 25608865..25608904 | 100..139 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:09:15 Download gff for
FMO04150.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21418298..21418380 | 376..461 | 93 | <- | Minus |
| arm_3R | 21418443..21418607 | 211..375 | 99 | <- | Minus |
| arm_3R | 21434450..21434520 | 140..210 | 100 | <- | Minus |
| arm_3R | 21434587..21434626 | 100..139 | 100 | <- | Minus |
