FMO04152.5prime Sequence
574 bp (574 high quality bases) assembled on 2008-08-22
> FMO04152.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTACACAATCAACA
AGGGACCTAGCAAAATTGTTGCTAAAACGCGTCGCGGCCTGGCACCAAAT
TTTGAAAAATTCGAAAGCATCAAGGAGAGCGGCCGCAAGAACGCTAGTTT
CGATCTGAACAGTCCCGAGGAGCACAAAAACATACCGCGTCCGGTGTTTC
AACAGAGCTTCGCCACCAAGCGGATAACGCCAACCAAACTGATCGAGGAT
GAGGTGATAACGCCGCAACATGAGGAAATAATACGTTACATAAATGACTC
CTGGAACATGCTGGTGGCGCAGAATCCCTACGACTCGAGCTCATCCGCCA
AGCCTGTTGAGAAACCTGTAGCGGATGCCAACAACAACAGCGCCGCCAGT
CCAGTGGAAAGCATAATGGCCAACAGCCCAGTGCCCGCTGCCTCAACAGC
CACTGTCTGGGTGGAACCACCGAGTCCAGCGCTACAGGACTTCAAGCCCT
TCGACCTGGAGTCGTGGTGGGGACGTCGCCTCTTCCAGAACATAACCAAA
AGCCTGGCAAGCTTTCTAGACCAT
FMO04152.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7841-RB | 1628 | CG7841-RB | 402..924 | 34..556 | 2585 | 99.6 | Plus |
| CG7841-RA | 1377 | CG7841-RA | 402..924 | 34..556 | 2585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15505892..15506148 | 556..300 | 1255 | 99.2 | Minus |
| 3L | 28110227 | 3L | 15506227..15506345 | 299..181 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 15507473..15507567 | 180..86 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 15507798..15507851 | 87..34 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 19:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 375..434 | 117 | 68.3 | Plus |
FMO04152.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:58 Download gff for
FMO04152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7841-RA | 396..924 | 27..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:50 Download gff for
FMO04152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7841-RA | 432..960 | 27..556 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:16 Download gff for
FMO04152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7841-RA | 396..924 | 27..556 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:16 Download gff for
FMO04152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15505892..15506148 | 300..556 | 99 | <- | Minus |
| 3L | 15506227..15506345 | 181..299 | 100 | <- | Minus |
| 3L | 15507473..15507566 | 87..180 | 100 | <- | Minus |
| 3L | 15507799..15507851 | 34..86 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:58 Download gff for
FMO04152.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15498992..15499248 | 300..556 | 99 | <- | Minus |
| arm_3L | 15499327..15499445 | 181..299 | 100 | <- | Minus |
| arm_3L | 15500573..15500666 | 87..180 | 100 | <- | Minus |
| arm_3L | 15500899..15500951 | 34..86 | 100 | <- | Minus |
