FMO04153.5prime Sequence
895 bp (895 high quality bases) assembled on 2008-08-22
> FMO04153.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTATGGTCCTGGG
GTGAAAGTGGGTAACTGGCTGGAAACTGCCTTGTCGGAGGAGATGCGTAT
GAGTGAAATGAAGAAGCGTCGGGAGAGCGGTAACCTGCTGCTGGACAGGA
CCCGTGCCGTCTACGACCGCTTCTACCAGGGAACAGTGCTGGGTCCGCCG
CAGGATGTTCTGGCCTTCGGCGTGGTGGTCCAGATCCGGCCCGTGAAGAT
CGGTGTCTGCCGCCAACAGGTTTCGGATCAGAACCTGGTGCTTTCGGTGG
TAATTACTCAGGAGGGACTGCATCGCAACTGCAAGACCATCAACGAGATG
TGTGATCTTACGGTGGCACCTTCGCCGCGTCCCGCGTTGCGCAACAGCTT
CAGAATCGTCAGTCCGAACGAGGATGACCGTACCGGTCAGTATCTGGCCT
ACGGCGAGAAGTTCCGCCTGCAAGCCCTGGAGCCTGCTGATGAGCCTATG
TATGTTTTCAGCGGTCCCAAGAGGCTGAACCTCTCGCTTCCCGTGGAGAA
GGCGTTCTTTACAACCAAAAACGGCGAGGTTACACTTCCACTCGGCTTAG
TGTCCCATAAGAATTGTGGCCCCTCTGCCCGTGTGCCCACTTCGCACACT
CACTTCTTCTGCGCCCACAAGGATCCCGATCTTCGATTCGAAAGCGAAGG
CAAGACCATACCAGTACACAATCCGCTTGTCATTGTTCACGCGGTTACCA
ATCGAAATTTGGCTGTGGAGAATGTTTTGGCCAACACCTTGTTTGGCCCC
GAGTTCCAGTGTCCGTGCAGACGTACAAGAATGTGTACAAGCGCGAGACA
TGGAAGAACCTGTGGAAGTTCACATATGCAAGCTTTCTAGACCAT
FMO04153.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15498-RA | 1139 | CG15498-RA | 122..964 | 36..877 | 4175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21568332..21568852 | 611..91 | 2605 | 100 | Minus |
| 3R | 32079331 | 3R | 21567694..21567858 | 877..714 | 775 | 99.4 | Minus |
| 3R | 32079331 | 3R | 21568169..21568275 | 716..610 | 520 | 99.1 | Minus |
| 3R | 32079331 | 3R | 21568972..21569028 | 92..36 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:49 has no hits.
FMO04153.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:19 Download gff for
FMO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15498-RA | 113..964 | 25..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:52 Download gff for
FMO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15498-RA | 113..964 | 25..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:05 Download gff for
FMO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15498-RA | 113..964 | 25..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:05 Download gff for
FMO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21567694..21567858 | 714..877 | 99 | <- | Minus |
| 3R | 21568172..21568273 | 612..713 | 99 | <- | Minus |
| 3R | 21568332..21568850 | 93..611 | 100 | <- | Minus |
| 3R | 21568972..21569037 | 25..92 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:19 Download gff for
FMO04153.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17393416..17393580 | 714..877 | 99 | <- | Minus |
| arm_3R | 17393894..17393995 | 612..713 | 99 | <- | Minus |
| arm_3R | 17394054..17394572 | 93..611 | 100 | <- | Minus |
| arm_3R | 17394694..17394759 | 25..92 | 92 | | Minus |
