FMO04155.5prime Sequence
658 bp (658 high quality bases) assembled on 2008-08-22
> FMO04155.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTACTACAAA
ACCACAACACTGTGGTGGCCCGTTCCACCTTGACGCCGAACAGCAGCAGC
CAGAACTTTGGCTCCCAACATCCAGCTGGAACGCCCAATGGATCCGGAAC
CGGACGTAGTCCCCTGAACGCCGGACCCAGCACCCAACGTCCCATTATCG
ACCTGTTGGTGGCCATGGTGGCCGTGCCGGTGCTTATCCTCTGCGCCCTG
CAGCTGGAGAAGAATCTGCGGGACAATAGCGTGGAGTCTCGCTGGTTGGT
TTTCGCCCTGGGCATCGGGATGCTGGTGATCAGCGTGATCATCTGCGGTT
ATGTCACGCACCGCATGGGCGTCTGCATTTGGGCGGGACCCATCGACGAG
GCGGGAAACAGGGCCACCAATGGAGCCATGCCACATATCAACTCCCAGAA
CGATGTGCTGCGCATTGTCGACTCACTGCCGCCAAGTTACGAAAGCGTGG
TCAAGTTCGAGCTACCGCCGCCGACCTACGAATGCCTGGTCATCAGCTGG
GGTCGGTCGAAGGATCTGGAGCCGGCACAGACCTCAGCCAAGCGAGGAGC
TGGTGGATCCAACTCCCCGCCCGGGTCCACCCTGCACATCGCAAGCTTTC
TAGACCAT
FMO04155.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13004-RB | 2234 | CG13004-RB | 906..1513 | 33..640 | 3010 | 99.7 | Plus |
| CG13004-RD | 2321 | CG13004-RD | 998..1600 | 38..640 | 3000 | 99.8 | Plus |
| CG13004-RC | 936 | CG13004-RC | 49..651 | 38..640 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16827676..16828074 | 436..38 | 1980 | 99.7 | Minus |
| X | 23542271 | X | 16827402..16827605 | 640..437 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:00:31 has no hits.
FMO04155.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:14 Download gff for
FMO04155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RB | 896..1507 | 28..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:56 Download gff for
FMO04155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RB | 896..1507 | 28..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:35 Download gff for
FMO04155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RB | 902..1513 | 28..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:35 Download gff for
FMO04155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16827402..16827605 | 437..640 | 100 | <- | Minus |
| X | 16827676..16828078 | 30..436 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:14 Download gff for
FMO04155.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16721435..16721638 | 437..640 | 100 | <- | Minus |
| arm_X | 16721709..16722111 | 30..436 | 98 | | Minus |
