FMO04157.5prime Sequence
1259 bp (1053 high quality bases) assembled on 2008-08-22
> FMO04157.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGGAAAG
GGGGAGATCATCCAGATCCACATTGGCCAGGCCGGTGTGCAGATAGCCAA
CGCCTGTTGGGAGCTCTTCTGTCTGGAGCACGGCATTTTGGCCAATGGAA
GACTAACCCAGTCGCCCATGGACGACTCGTTCCTCACGTTCTTTGAGTTC
ACCAGCCATCAGCCGTGTGTGCAACCTCGACTCGTCATGATCGACACGGA
GCCCACAGTGATAGATGAAATCCGTACCGGCTCCTACCGCAACCTCTTTC
ATCCGGATACTTTGATTACGGGCAAGGATGACAGTGGCAGTAACTTCGCC
AGGGGCTATAATCTGATGGCCAGCGAGCTGTTGGATCGCTCCATGAACGC
CATTCGTCGCGTGGCGGATCGTTGCAGAAATCTCAGGGGTTTCCTGGTCT
TTCGAGCAATCGGCGGAGGTTCTGGTTCCGGGCTAGGGACTCGCATCATG
GAGAGACTGGTCGAAGACTTTGGCAAGAAGATGACTGTTGTGGAGTTCCT
CGTTTATCCTTCGCCTTCAATCTCTCCGGTTATTGTGGAACCCTACAACG
CACTGCTGGCTGCCCATTTCTCCATGGACTGCGCCGATGTATCGTTTATT
GTGGACAATGAAGCTCTATACGACATATGTGCTAATACACTCAATGTCCC
TGCTCCCACATATACGAATCTCAATAGGATCATCGCACAAGTGGTTTCCA
GCTTTACGGCCTCACAGCGTTTTGGTGGCGGATCGACCGTGAGTTTTCAG
AGCTGCAGACGAACCTGGTGCCATATCCCCGAATCCACTATCCGCTGATC
AACTACGCACCACTGGTACCCATTTCGCACTCGCAGTTCGTCAATATGTC
GACGCCCAGCTACGGGTCAGTGTTTCCAGATGAGCAACCAAATGGTCAGA
TGCAATCCCTCGCATGGCAGTACATGGCAGTGGTGCTGCTCTACCGCCGT
TGATATCGCACCCAATGAGATCATACGGCGCTGGAGAACATCAAGCGGAC
AGGTCTCCGTTTTGTCGACTGGTCGCCCACGGGCCTTAGATCGGCGTAGC
CCATGCCGCGTACTATGTTCTTGGGGGGGATCTGGCCCCCCAATCGCGCC
TGGCGTGCCATCTCGAACAACGGACATTCGGGATGCGGTGGTCCCTGTCC
AGGTTCCAAGGCTCTTACACGGCGAACCTCCTCTTCCAATCGTGGCGCAG
AGAGACTCA
FMO04157.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-RA | 1549 | CG7794-RA | 101..1248 | 37..1171 | 5170 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18024462..18025077 | 569..1171 | 2185 | 94.8 | Plus |
| 3R | 32079331 | 3R | 18024091..18024396 | 263..568 | 1500 | 99.3 | Plus |
| 3R | 32079331 | 3R | 18023807..18024034 | 37..264 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:21 has no hits.
FMO04157.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:39 Download gff for
FMO04157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1260 | 28..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:57 Download gff for
FMO04157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1260 | 28..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:57 Download gff for
FMO04157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1260 | 28..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:57 Download gff for
FMO04157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18024093..18024396 | 265..568 | 99 | -> | Plus |
| 3R | 18023801..18024034 | 28..264 | 98 | -> | Plus |
| 3R | 18024462..18025089 | 569..1181 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:39 Download gff for
FMO04157.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13849523..13849756 | 28..264 | 98 | -> | Plus |
| arm_3R | 13849815..13850118 | 265..568 | 99 | -> | Plus |
| arm_3R | 13850184..13850811 | 569..1181 | 95 | | Plus |
