FMO04161.5prime Sequence
1186 bp (936 high quality bases) assembled on 2008-08-22
> FMO04161.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTATTACGGAGA
CAGCAGCGACAACAACTACCGGACTGGGAGCGGCAAACGCCGTGGAGAGC
AAACAAATCCTCTCGCTCGAGGTGTTCCAGGACATCTTCAAGCACGTGGA
ACCGGATGTGCAGATCGATGCCTTCGAGCTGGCCCAGGGCTCCGACCGGG
GTGACAACTATACGGCCGCCCTGTATCGCATAAAGCTAACCGGAAAGCGA
AGGAGTCTCAAATGGGAACAGAACGTCATTTGCAAGGTGATGCCAGAAAG
TGTAGTCGCGCGGGAGGCCTACAAGAGCGACAAGCTCTTCCGCAACGAGG
TGCAGTTCTACAACACCATCATGCCGGAACTGCTCAAGTTCCAGGCGAGC
AAAACGAACCAGGACACACCCGTGTTTAATGCCATTCCCAAGTGCTATTC
AGCCAGGCATGATCTGCTCATAATGGAGGATCTTCGCGAACGTGGCTTTC
AGATGTCCGACCGCCACAAAGGCCTCAGTCTGGAGGAGACGCAGTCCGTC
CTGCTGCAGGTGGCCCAGCTGCACGGCCTTAGTCTAGCCTACAAGTTCGA
GAAACCGCTGGAGTTTAGCAATCTGTGCAGCATGATCAGCGAGGGCATAT
TCTGCACGGCCAATACGAGTTGGTATCGAAACTACTACGAGCGCCTTACC
AAGAACGCCATTCAGATGGTGTCCGAGGTGCTGCCCCCCGACTCCAAGTA
TGTCCTGAAATGAACAAATTCGCAGAAGCTCCTCATTCTTCGGCCGGATG
GTGAAGTTGGCCAGTACCGAGTCGCCGTTATCGGCCATTTGCCACGGCGA
CTGTTGGGTGAACACTTTCTGTACAACTATGATCAGAAGATCACACCGAG
TGCTTGAGTGGCGCTGCTCGACTTTCAGCTGATACGCTACAAGCTCGATC
GCACTGACATGCAATCTGCTGTACTGCTGCACACAGAATGCCCGATGCTC
AGCTGCGACTCTGCTCAGATCTTACCGGAGGACTGTCGATGCTGCAAATG
CTCTGCAAATTTGCGACACTGCACCGTTACGAGCTGCAGGATTTGCCAGG
ACCTGAGCTCGACCTGATGTTGCATGGAATTCTGCATAACTGCTCGAAGT
TCGATTGTATGATGAGCCATGACTCGGGAAAAGTCG
FMO04161.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-RA | 1606 | CG14314-RA | 156..1241 | 35..1092 | 4465 | 95.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18216946..18217460 | 476..982 | 1985 | 95.9 | Plus |
| 3R | 32079331 | 3R | 18216525..18216690 | 177..342 | 785 | 98.2 | Plus |
| 3R | 32079331 | 3R | 18216297..18216440 | 35..178 | 690 | 98.6 | Plus |
| 3R | 32079331 | 3R | 18216750..18216884 | 342..476 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:47:58 has no hits.
FMO04161.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:07 Download gff for
FMO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..1217 | 35..1072 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:05 Download gff for
FMO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 164..1225 | 35..1072 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:20 Download gff for
FMO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..1217 | 35..1072 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:20 Download gff for
FMO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18216297..18216440 | 35..178 | 98 | -> | Plus |
| 3R | 18216527..18216690 | 179..342 | 98 | -> | Plus |
| 3R | 18216751..18216884 | 343..476 | 99 | -> | Plus |
| 3R | 18216947..18217566 | 477..1072 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:07 Download gff for
FMO04161.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14042019..14042162 | 35..178 | 98 | -> | Plus |
| arm_3R | 14042249..14042412 | 179..342 | 98 | -> | Plus |
| arm_3R | 14042473..14042606 | 343..476 | 99 | -> | Plus |
| arm_3R | 14042669..14043288 | 477..1072 | 94 | | Plus |
