FMO04162.5prime Sequence
564 bp (564 high quality bases) assembled on 2008-08-22
> FMO04162.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGGCGAAGAGAAA
CGTAGCGCCCATTCCCAAAACCCACGAGCGCCCTCCAGGTCCCAGGGGTC
AGGATACCAAGGGCAACAATGAGCTCTTCCTGAAGGAGGTCTTCAATACC
ACCAATAAATATCGGGCAATGCACGGCTGTCCCGCGGTGACCATTAATGC
TGCACTAAATAAGCTGGCTCAGGAATGGGCCAATCATCTCCGCGATCAGA
ACACAATGGCGCACAGACCCAATCCCAAGTATGGCGAAAACATTTTCCTC
TCCGGTGGAATGGATGTGACCGGTGATCTGCCGGTGGAAATGTGGTATCG
GGAAATCAATAGCTACGATTTCAACAAGGCGCAGTTTGTGCCCACCGCTG
GACACTTTACTCAGCTCATTTGGAAGTCGTCGGTGGAAATGGGTTCGGGT
GTGGCCCGAAAAGCGGATAGAACTTGGGTGGTTTGCAACTACAATCCTCC
CGGCAATGTTGTGGGTTTGTTCAAGGATAATGTGCCGCCAAAGCAAGCAA
GCTTTCTAGACCAT
FMO04162.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4270-RA | 686 | CG4270-RA | 117..626 | 37..546 | 2520 | 99.6 | Plus |
| CG4270-RB | 584 | CG4270-RB | 117..541 | 37..461 | 2095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2263816..2264042 | 235..461 | 1120 | 99.6 | Plus |
| 2L | 23513712 | 2L | 2263558..2263755 | 37..234 | 975 | 99.5 | Plus |
| 2L | 23513712 | 2L | 2264097..2264181 | 462..546 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:22 has no hits.
FMO04162.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:21 Download gff for
FMO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4270-RA | 111..631 | 30..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:07 Download gff for
FMO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4270-RA | 89..609 | 30..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:47 Download gff for
FMO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4270-RA | 111..631 | 30..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:47 Download gff for
FMO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2263552..2263755 | 30..234 | 97 | -> | Plus |
| 2L | 2263816..2264042 | 235..461 | 99 | -> | Plus |
| 2L | 2264097..2264186 | 462..553 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:21 Download gff for
FMO04162.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2263552..2263755 | 30..234 | 97 | -> | Plus |
| arm_2L | 2263816..2264042 | 235..461 | 99 | -> | Plus |
| arm_2L | 2264097..2264186 | 462..553 | 96 | | Plus |
