FMO04164.5prime Sequence
983 bp (983 high quality bases) assembled on 2008-08-22
> FMO04164.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCGTCTTAACTA
CTCACGAAATAGATTGCATTATAAAGGAGCTCACATCCCTGAATGGAAGT
GAGTGCACATTAAAGGAGGAACTAATCGAGAGACTCATTCAACAGACTCG
TGAAGTGATCAAATGGCAACCGATGCTGCTCGAACTTCAGGCTCCGGTCA
ATATATGCGGCGATATTCATGGCCAGTTTACAGATCTCTTGAGGATTTTC
AAGGCATGCGGCTTTCCACCCAAAGCCAACTATTTATTTCTCGGTGACTA
TGTGGACCGGGGCAAGCAATCGCTGGAAACAATTTGCCTGCTATTTGCTT
ACAAAGTTAAATATCCGCTAAATTTCTTTTTGCTTCGCGGCAATCACGAG
AGCGCCAGTATAAATAAAATTTACGGATTTTATGACGAGATCAAACGTAG
ACACACTGTTCGTCTGTGGCACAGTTTCACCGATTGCTTCAACTGGCTTC
CGGTGGCCGCATTGGTGGGCGAGCGCATCTTCTGCTGCCACGGAGGACTG
AGTCCATCGCTCCGGAATTTGCAACAGATCAATCATATTCAGCGACCCAC
TGATATTCCGGATGAGGGTATTATGTGCGATCTCCTTTGGGCGGATCTAA
ATCACACCACCAAAGGCTGGGGTCACAACGATCGCGGTGTGAGCTTCACC
TTCGATAAGGTCATAGTTCGGGATTTTCTTAAAGCCTTCGACTTGCAACT
TATGGTTCGCGCCCATGAGTTGTGGAGGATGGATACGAGTTCTTTGCCAA
CCGACAGCTGGTCACCGTATTCTCGGCCCCAACTATTGCGGTATGATGAA
CAATGCCGGCGGAGTGATGAGTGTTAGCACAGACTTGATCTGCTCTTCGT
CATTATTCTACCGTGTCACAAATACAAATGATTGCGACTGATGCCACCAA
ATGCCGACTACGAGAGAGCAGCTTTCAGACCAT
FMO04164.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpY-55A-RB | 1082 | CG10930-RB | 83..1013 | 35..960 | 4515 | 99.4 | Plus |
| PpY-55A-RA | 1175 | CG10930-RA | 83..1013 | 35..960 | 4515 | 99.4 | Plus |
| flw-RC | 3883 | CG2096-RC | 703..1082 | 176..555 | 415 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17955558..17956488 | 960..35 | 4390 | 99.4 | Minus |
| X | 23542271 | X | 15359811..15360177 | 555..189 | 395 | 73.8 | Minus |
| 3R | 32079331 | 3R | 12425162..12425551 | 555..166 | 315 | 72.1 | Minus |
| X | 23542271 | X | 10406451..10406701 | 176..426 | 295 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:57 has no hits.
FMO04164.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:51 Download gff for
FMO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpY-55A-RA | 83..1024 | 35..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:11 Download gff for
FMO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpY-55A-RA | 83..1024 | 35..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:14 Download gff for
FMO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpY-55A-RA | 83..1024 | 35..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:14 Download gff for
FMO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17955553..17956488 | 35..964 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:51 Download gff for
FMO04164.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13843058..13843993 | 35..964 | 99 | | Minus |
