FMO04165.5prime Sequence
979 bp (897 high quality bases) assembled on 2008-08-22
> FMO04165.5prime
GTATAGCATACCTTATACGAAGTTATCAATCGACATGTTCAACGGCTTAC
CAACCTTGATGAAATACCCAGACCGATCGCCTTTTCTGTGCGGTCCCAGC
GGATTTACATTCGACAATTGTCTGCGCAACAAACAACTAAAAGAGAATGG
CCTTGAGGAGCCGAATAGCTTTACTACTGGCACCACTGTGGTGGGCATCG
TGTTCGACGGCGGAGTAATCATAGGCGCCGAGTCCAGGGCTACCAGCGGC
GGCATAGTTTTCTCAAAGACGTGCCGCATAATTATTGAGCTGCATGCCAA
CTTTTTTGCCGCGGGAGCTGGAACCGCTCGGGACACAAAAGCCCTGGTGG
AACTGACGCGGGCGCAGCTGGAGCTTCACCGGATGAACACTGGGTTCCGC
AAAGTGCCGGTGTGCTGTGCCAACCAGATGATACGGCAGCTGCTGTTCCG
TTTCAACGGGAATATAGATGCCGACATGATCATAGGCGGCGCGGATAACA
CCGGAGCGCATCTCTTCTGCACCCGCAGCGACGGCTCCACGGACACGGCG
CCCTTCACGTCCATCGGCTCCGGCTACCAGGTATCCATGTCCATCCTGGA
GTCACGGTGGTCGGAGGACCTCTCCGAGGAGTCCGCCTGCGCCCTGGCTT
GCGACGCCGTGGCCGCGGGCATGAAGAACGACCTGTGCTCCGGAGGCAAG
GTCAGCCTCTGCGTCGTGCGCTGCGACTTCTCGGTGCAATGGCCCGAGCA
GCTCCCCGCCAGGTCCCACCAACTCGCACCTATCGCCTGTCACCCAAGCC
CGGCCGAACCACCATTCTATCCACCTTGGTGCATCCGGTGCTTTCGTGGC
GGGGCGCCCTAGCTCTGCCCGAGCCAGGAGGTAGCCAGGAGCCAGGGCGA
GGACCATGCACCTAGTGGTTGCCGCCAGAGGGCAAGGAGGTCCCGCGCAG
ATCCAACTGTTCTGGAACAAGTCGGACGC
FMO04165.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R2-RA | 1319 | CG12161-RA | 93..1021 | 35..966 | 4420 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5218057..5218705 | 957..307 | 3000 | 98.8 | Minus |
| 3R | 32079331 | 3R | 5218771..5218951 | 306..126 | 860 | 98.3 | Minus |
| 3R | 32079331 | 3R | 5219345..5219436 | 126..35 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:05 has no hits.
FMO04165.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:26 Download gff for
FMO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 11..948 | 35..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:14 Download gff for
FMO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-RA | 11..948 | 35..976 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:15 Download gff for
FMO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 93..1030 | 35..976 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:15 Download gff for
FMO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5218040..5218705 | 307..976 | 98 | <- | Minus |
| 3R | 5218771..5218950 | 127..306 | 98 | <- | Minus |
| 3R | 5219345..5219436 | 35..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:26 Download gff for
FMO04165.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1044493..1044672 | 127..306 | 98 | <- | Minus |
| arm_3R | 1045067..1045158 | 35..126 | 100 | | Minus |
| arm_3R | 1043762..1044427 | 307..976 | 98 | <- | Minus |
