FMO04166.5prime Sequence
1280 bp (1071 high quality bases) assembled on 2008-08-22
> FMO04166.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCATCCTA
GAGAAGATCGCGGAGATCGAGCGCGAGATTGCGCGGACGCAGAAGAACAA
AGCCACCGAATACCATCTGGGCCTGCTGAAGGCCAAGTTGGCCAAGTATC
GCTCCCAGCTGCTGGAGCCATCCAAGAAGGGCGAAAAGGGCGACGGATTT
GATGTGCTCAAGAGCGGCGACGCCCGGGTGGCCCTCATTGGCTTTCCCTC
CGTGGGGAAGTCCACAATGTTGTCCACTTTGACCAAAACGGAATCGGAGG
CGGCAAACTATGAGTTCACCACTTTGACCTGCATTCCGGGTGTCATTGAG
TATCAGGGTGCCAATATCCAGTTGCTGGATCTGCCCGGAATCATCGAGGG
CGCTGCCCAGGGCAAGGGGCGTGGTCGTCAGGTCATTGCCGTAGCCCGCA
CCGCTGATTTGGTGCTGATGATGCTGGACGCCACCAAGCCCAACGTTCAC
CGGGAGCTGCTCGAGCGAGAGCTGGAGAGCGTGGGCATTCGTCTGAACAA
GCGCAAGCCCAACATCTACTTCAAGCAGAAGAAGGGCGGCGGCCTGAGCT
TCAACGCCACCTGTTCCCTTACGCGCTGCAACGAGAAAATGGTCCAGACC
ATCCTGCACTCCTTCAAGATCTTCAACGCCGAGGTGCTCTTCCGCGAAGA
CTGCACCGAGGACGAGTTCATCGACGTGGTCACCGCCAACCGTGTGTATC
TGCCCTGTCTGTATGTCTACAACAAGATCGATCAGATCTCCATCGAGGAG
GTGGACCGCTTGGCGCGCCAGCCAAACTCGATAGTGGTTAGTTGCAACAT
GAAACTTAATCTGGACTACATGATGGAGCGCTCTGGGAAGCTCTCCAGCT
CATCAGAGTGTACACAAAGAAGCCAGGCGCTCCTCCAGACTTTGACGATG
GATTGATTCTGAGAAAGGGCGTCAGTGTGGAGCATGTGTGCCATGCCATC
CATCGCACCGCTGGCGGCGCAGTTCAGTATGCCCTGGTGGGGGGCCCCTC
CACGAAATACTCGCCGCAGCGCGTAGGGATTGCCCATGTGATGACGACGA
GACGTCATCCAGGTGGTGAAGAAGGCAGCCTTTCTAGACATCGTTGGCCC
GCGTGCCCAGTAAGTGCCTACTAATCCATAATCAATTCTAATTACACACT
AGCTAGATCTGTATGGACTGGCTTGGATCCACATAAAGCGCCCGGGGCAC
ACCGAGCGTCTTGAACACCCTAGAGATGAG
FMO04166.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6195-RA | 1250 | CG6195-RA | 118..1206 | 38..1123 | 5235 | 99 | Plus |
| 128up-RA | 1304 | CG8340-RA | 440..548 | 344..452 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19647212..19647878 | 968..303 | 3285 | 99.9 | Minus |
| 3R | 32079331 | 3R | 19647931..19648133 | 303..101 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 19646974..19647133 | 1123..966 | 545 | 95 | Minus |
| 3R | 32079331 | 3R | 19648229..19648293 | 102..38 | 295 | 96.9 | Minus |
| 2R | 25286936 | 2R | 12037922..12038030 | 344..452 | 215 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:48 has no hits.
FMO04166.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:02 Download gff for
FMO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6195-RA | 204..1298 | 31..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:16 Download gff for
FMO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6195-RA | 204..1298 | 31..1123 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:23 Download gff for
FMO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6195-RA | 112..1206 | 31..1123 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:23 Download gff for
FMO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19646974..19647131 | 968..1123 | 94 | <- | Minus |
| 3R | 19647213..19647877 | 304..967 | 99 | <- | Minus |
| 3R | 19647931..19648131 | 103..303 | 100 | <- | Minus |
| 3R | 19648229..19648296 | 31..102 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:02 Download gff for
FMO04166.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15472696..15472853 | 968..1123 | 94 | <- | Minus |
| arm_3R | 15472935..15473599 | 304..967 | 99 | <- | Minus |
| arm_3R | 15473653..15473853 | 103..303 | 100 | <- | Minus |
| arm_3R | 15473951..15474018 | 31..102 | 91 | | Minus |
