FMO04169.5prime Sequence
1270 bp (1001 high quality bases) assembled on 2008-08-22
> FMO04169.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTGCTCCACTT
GCAAATCCCCCAACAGACGACGAGCGTGTGAGGGCGCTGACCAATTACCG
TACCAAGCTCCTGGAGCACCGCGAGATCGAATCCAAATTGAAAGCTTTGC
GAGACAAGTACAAGGTCGTGAATGCCGAGTACGAAAAGTCCGAGGACGAT
CTGAAGGCTCTCCAGAGTGTGGGTCAGATGGTCGGGGAAATCCTGAAGCA
GCTCACACCGGACAACTTCATCGTGAAGGCCTCGAACGGACCGCGCTACG
TGGTCGGATGTCGCCGGCAGATTAACAAGGAGAAGCTAAAGCCCGGCACA
CGTGTCGCCCTGGATGTGACCACTCTCACCATCATGCGCTATTTGCCGCG
GGAAGTGGATCCCCTGGTGTACAACATGACCCATGAAGATCCCGGAAACG
TAAACTACGCTGAAATCGGTGGACTTGGTCAGCAAATCCGCGAGCTTCGC
GAGGTCATTGAACTGCCGCTACTAAATCCAGATATTTTCCTACGCGTTGG
CATAAGTCCGCCCAAGGGATGCCTGCTCTACGGACCGCCTGGCACCGGAA
AAACTCTCCTGGCCCGCGCCATCGCCTCCCAGATGGACGCCAACTTCTTG
AAGGTCGTTTCCTCTGCAATTGTGGACGAGTACATTGGCGAGAGTGCCCG
ACTGATCCGGGAGATGTTTGCCTACGCCCGTGACCACCAGCCGTGTATCA
TATTCATGGACGAGATCGACGCAATCGGTGGTCGCCGCTTCTCGGAGGGA
ACATCCGCCGACCGAGAGATCCAGCGCACGCTGATGGAACTGCTTAACCA
GATGGATGGATTCGATGCTCTTGGCCAGGTAAAAATGATCATGGCCACCA
ATCGTCCAGATTCCACTGGATCCGGCGCTGCTGCGTCCTGGACGACTTGA
TCGCAAATTGGAAATTCCGCTGCCCAACGAAGTGCGCGTATTGACATTCT
TATGATTCACGCCGAACCACTGAACAACGCGGCGAAATCGACTATGAGCG
TGGTTAAGCTTCTCGATTTGTTCATGGTGCCGATCTACGGAACATTTGCA
CGAAGCCCGGCTTTTTTGCCCTCCCCTGCCATTGGAGTTTTTCCTTCAAG
AAAAATTTCATGGAGGCCGTCCGCCACGATACGGACATAGGACCTGGAGT
CCGTTCTGACTACGCCTATAGCCAGCCTTTCTCTGCGTCCATCTCTCTTT
GGCGCGGCAGGCGTACATAA
FMO04169.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpt4R-RB | 1502 | CG7257-RB | 193..1335 | 36..1174 | 5135 | 97.2 | Plus |
| Rpt4R-RA | 1391 | CG7257-RA | 82..1224 | 36..1174 | 5135 | 97.2 | Plus |
| Rpt4-RB | 1465 | CG3455-RB | 263..1063 | 179..980 | 1510 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11942104..11942724 | 36..656 | 3075 | 99.7 | Plus |
| 3L | 28110227 | 3L | 11942790..11943318 | 650..1174 | 1900 | 93.6 | Plus |
| X | 23542271 | X | 6290064..6290775 | 980..268 | 1340 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:51 has no hits.
FMO04169.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:32 Download gff for
FMO04169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4R-RA | 80..1237 | 33..1187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:22 Download gff for
FMO04169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7257-RA | 80..1237 | 33..1187 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:19 Download gff for
FMO04169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpt4R-RA | 80..1237 | 33..1187 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:26:19 Download gff for
FMO04169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11942103..11942721 | 36..653 | 99 | -> | Plus |
| 3L | 11942794..11943331 | 654..1187 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:32 Download gff for
FMO04169.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11935203..11935821 | 36..653 | 99 | -> | Plus |
| arm_3L | 11935894..11936431 | 654..1187 | 93 | | Plus |
